https://github.com/huang-sh/astk
Alternative Splicing ToolKit
https://github.com/huang-sh/astk
alternative-splicing as rna-seq
Last synced: 5 months ago
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Alternative Splicing ToolKit
- Host: GitHub
- URL: https://github.com/huang-sh/astk
- Owner: huang-sh
- License: bsd-3-clause
- Created: 2021-10-08T12:47:50.000Z (over 4 years ago)
- Default Branch: main
- Last Pushed: 2025-10-27T08:10:10.000Z (8 months ago)
- Last Synced: 2025-10-27T10:14:56.814Z (8 months ago)
- Topics: alternative-splicing, as, rna-seq
- Language: Python
- Homepage: https://huang-sh.github.io/astk-doc/
- Size: 103 MB
- Stars: 10
- Watchers: 1
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
- License: LICENSE
Awesome Lists containing this project
README
What is ASTK?
===============
**ASTK** is a command-line software for comprehensive alternative splicing analysis including:
- characterizing distribution and expression patterns of alternative splicing events
- systematically analyzing functional effects of AS events at the gene- and exon-level respectively
- dissecting out splicing-associated sequence features and epigenetic marks
- inferring the splicing regulatory code for each type of AS.
Documentation
===============
The documentation for ***ASTK*** is available on [astk-doc](https://huang-sh.github.io/astk-doc/).
How to cite
===============
Huang, S., He, J., Yu, L., Guo, J., Jiang, S., Sun, Z., Cheng, L., Chen, X., Ji, X. and Zhang, Y. (2024), ASTK: A Machine Learning-Based Integrative Software for Alternative Splicing Analysis. Adv. Intell. Syst. 2300594. https://doi.org/10.1002/aisy.202300594
How to contact
===============
- Shenghui Huang (hsh-me@outlook.com)