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https://github.com/hubmapconsortium/ccf-ontology

CCF Ontology v2.x
https://github.com/hubmapconsortium/ccf-ontology

human-reference-atlas ot2od030545

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CCF Ontology v2.x

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README

          

# Common Coordinate Framework Atlas ontology

## The Pipeline Workflow

![CCFO Generation Pipeline](https://user-images.githubusercontent.com/5062950/186229479-3963e4b6-1113-400a-b295-b975abe8715b.png)

In addition to the main pipeline, there is another pipeline that produces a "slimmer" version of the ontology that focuses only on the reference data.

![CCF Slim Generation Pipeline](https://user-images.githubusercontent.com/5062950/186230065-0ea55a86-9000-4dd4-b8dc-f941d3c9ba5b.png)

## For Ontology Users

### Browsing the ontology

The CCF ontology is accessible through:

* NCBI BioPortal Ontology Browser (https://bioportal.bioontology.org/ontologies/CCF)
* EBI OLS Ontology Browser (https://www.ebi.ac.uk/ols/ontologies/ccf)

### Finding the ontology

The CCF ontology is findable through the URL: https://purl.org/ccf/ccf.owl

## For Ontology Editors

### Editing the ontologies

Please visit [the SOP page](src/ontology/README.md) to read the rules and guidelines on editing the ontology.

## Contact

Please use this GitHub repository's [Issue tracker](https://github.com/hubmapconsortium/ccf-ontology/issues) to request new terms/classes or report errors or specific concerns related to the ontology.

## Acknowledgements

This ontology repository was created using the [ontology development kit](https://github.com/INCATools/ontology-development-kit).