https://github.com/ibrahimtanyalcin/i-pv

Interactive Protein Sequence VIsualization/Viewer - Interactive Circos
https://github.com/ibrahimtanyalcin/i-pv

amino-acid-sequence interactive-visualizations javascript-library mutation-analysis protein-sequence viewer visualization

Last synced: 7 months ago
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Interactive Protein Sequence VIsualization/Viewer - Interactive Circos

• Host: GitHub
• URL: https://github.com/ibrahimtanyalcin/i-pv
• Owner: IbrahimTanyalcin
• Created: 2015-11-15T22:39:25.000Z (almost 10 years ago)
• Default Branch: master
• Last Pushed: 2024-05-05T18:44:47.000Z (over 1 year ago)
• Last Synced: 2025-01-24T06:27:23.523Z (9 months ago)
• Topics: amino-acid-sequence, interactive-visualizations, javascript-library, mutation-analysis, protein-sequence, viewer, visualization
• Language: HTML
• Homepage: http://i-pv.org/
• Size: 66.6 MB
• Stars: 10
• Watchers: 3
• Forks: 1
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • Changelog: CHANGELOG.md

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README

          
# I-PV 

[![NPM](https://nodei.co/npm/ibowankenobi-i-pv.png)](https://nodei.co/npm/ibowankenobi-i-pv/)

[![I-PV Website](https://img.shields.io/badge/ipv-website-orange)](http://www.i-pv.org/)

[![Readme](https://img.shields.io/badge/ipv-readme-azure

)](https://github.com/IbrahimTanyalcin/I-PV/tree/master/i-pv)

[![Readme-Docker](https://img.shields.io/badge/ipv-docker-azure

)](https://github.com/IbrahimTanyalcin/I-PV/tree/master/docker)

[![Changelog](https://img.shields.io/badge/ipv-changelog-azure

)](https://github.com/IbrahimTanyalcin/I-PV/blob/master/CHANGELOG.md)

## Read the article

[![link](https://github.com/IbrahimTanyalcin/I-PV/blob/master/img/i-pv_article.jpeg?raw=true)](https://academic.oup.com/bioinformatics/article/32/3/447/1743584)

## Interactive Protein Sequence VIsualization/Viewer

I-PV aims to unify protein features in a single interactive figure. It is easy to generate and

highly customizable. Data is checked and then plotted. When you publish figures with I-PV, I recommed you also

post the files in the datatracks folder as supplementary. 

In I-PV is designed to convey complex proteomics information to the audience in an interesting format. 

Below are some [sample outputs](http://i-pv.org/EGFR.html).

![alt tag](https://github.com/IbrahimTanyalcin/I-PV/blob/master/img/sample.png?raw=true)

![alt tag 2](https://github.com/IbrahimTanyalcin/I-PV/blob/master/img/sample2.png?raw=true)

## Readme

[![Readme](https://img.shields.io/badge/ipv-readme-azure

)](https://github.com/IbrahimTanyalcin/I-PV/tree/master/i-pv)

## Changelog

[![Changelog](https://img.shields.io/badge/ipv-changelog-azure

)](https://github.com/IbrahimTanyalcin/I-PV/blob/master/CHANGELOG.md)

## Todo

[![Changelog](https://img.shields.io/badge/ipv-todo-azure

)](https://github.com/IbrahimTanyalcin/I-PV/blob/master/TODO.md)

## Publishing

- Run one of the publish scripts within `package.json`:

```

npm run publishPatchNPM

```

- The `gitTag.js` inside `/utils` can both update `npm` version and `org_ipv` version. 

- If you change peripheral files only, increment `npm` version. 

- If you change `SNPtoAA.pl`, increment both `npm` version and `org_ipv` version.

- Choose the right publish script based on above.

## Mirrorring

- Publish scripts automatically run `syncMirror`. For it to work, you must have `mirror.conf.json` that has `path` key, which points to the folder of the mirror. Both root folder and mirror folders are recursively searched with a depth of `5`.

- `azure.yaml` syncs a private azure repository. You can use it for other projects by changing the `REMOTE_ADDR` variable.

- `sync-public.yml` is the `azure.yaml` equivalent of syncing public remote master with your fork. For it work, create a remote branch with name `public` and add `GIT_USER_NAME` and `GIT_USER_EMAIL` secrets to your repo.