https://github.com/iglee/meme

Multiple EM for Motif Elicitation for discovering motifs in a group of related DNA or protein sequences.
https://github.com/iglee/meme

computational-biology meme sequence sequence-modeling

Last synced: about 1 year ago
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Multiple EM for Motif Elicitation for discovering motifs in a group of related DNA or protein sequences.

• Host: GitHub
• URL: https://github.com/iglee/meme
• Owner: iglee
• Created: 2020-11-01T03:12:53.000Z (over 5 years ago)
• Default Branch: main
• Last Pushed: 2020-11-14T06:58:47.000Z (over 5 years ago)
• Last Synced: 2024-11-06T17:50:33.670Z (over 1 year ago)
• Topics: computational-biology, meme, sequence, sequence-modeling
• Language: Python
• Homepage:
• Size: 2.93 MB
• Stars: 1
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

          
# MEME

Multiple EM for Motif Elicitation for discovering motifs in a group of related DNA or protein sequences.

Implementing as a homework for CESP527 CompBio- https://courses.cs.washington.edu/courses/csep527/20au/hw/hw3.html

Please run 

```

pip install -r requirements.txt

```

## How to Use

```

python src/meme.py -tr data/hw3-train.fasta -tt data/hw3-test.fasta

```