https://github.com/igordot/msigdbr

MSigDB gene sets for multiple organisms in a tidy data format
https://github.com/igordot/msigdbr

enrichment-analysis gene-sets genomics gsea msigdb pathway-analysis pathways

Last synced: 5 months ago
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MSigDB gene sets for multiple organisms in a tidy data format

• Host: GitHub
• URL: https://github.com/igordot/msigdbr
• Owner: igordot
• License: other
• Created: 2018-04-02T22:48:39.000Z (over 8 years ago)
• Default Branch: main
• Last Pushed: 2025-07-22T03:02:18.000Z (about 1 year ago)
• Last Synced: 2025-10-21T19:53:37.641Z (9 months ago)
• Topics: enrichment-analysis, gene-sets, genomics, gsea, msigdb, pathway-analysis, pathways
• Language: R
• Homepage: https://igordot.github.io/msigdbr
• Size: 77.6 MB
• Stars: 83
• Watchers: 8
• Forks: 14
• Open Issues: 2
• Metadata Files:
  • Readme: README.md
  • Changelog: NEWS.md
  • License: LICENSE

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README

          
# msigdbr: MSigDB data frame

[![CRAN](https://www.r-pkg.org/badges/version/msigdbr)](https://cran.r-project.org/package=msigdbr)

[![CRAN downloads](https://cranlogs.r-pkg.org/badges/last-month/msigdbr)](https://cran.r-project.org/package=msigdbr)

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The msigdbr R package provides Molecular Signatures Database (MSigDB) gene sets:

* in an R-friendly tidy format with one gene pair per row

* for multiple frequently studied model organisms in addition to the original human genes

* as gene symbols as well as NCBI Entrez and Ensembl IDs

* without accessing external resources requiring an active internet connection

Check the [documentation website](https://igordot.github.io/msigdbr/) for more information.