https://github.com/igsr/igsr_archive

Contains code to perform several operations involving files in the IGSR (1000 genomes) FTP archive
https://github.com/igsr/igsr_archive

Last synced: about 1 month ago
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Contains code to perform several operations involving files in the IGSR (1000 genomes) FTP archive

• Host: GitHub
• URL: https://github.com/igsr/igsr_archive
• Owner: igsr
• License: apache-2.0
• Created: 2020-04-16T10:26:16.000Z (over 4 years ago)
• Default Branch: master
• Last Pushed: 2024-04-15T18:00:46.000Z (8 months ago)
• Last Synced: 2024-09-21T09:17:02.643Z (3 months ago)
• Language: Python
• Homepage:
• Size: 947 KB
• Stars: 1
• Watchers: 5
• Forks: 3
• Open Issues: 3
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        
# igsr_archive

Contains code to perform several operations involving files in the IGSR (1000 genomes) FTP archive: ftp://ftp.1000genomes.ebi.ac.uk/vol1/ftp/

Basic functionality that this repo provides is:

* adding files on the FTP

* moving files on the FTP

* dearchiving files from the FTP

* updating records in the FTP

* Recording FTP changes in our tracking database

## Installation

* Use pip for installing:

  `pip install igsr-archive`

And you are ready to go!

## Documentation

Go to https://igsr-archive.readthedocs.io/en/latest/

### Indexing scripts

The docs on how to generate the different index files we use in our project can be found [here](https://github.com/igsr/igsr_archive/wiki/Indexing-scripts)