https://github.com/illumina/illuminahumanmethylationmsamanifest
https://github.com/illumina/illuminahumanmethylationmsamanifest
Last synced: 3 months ago
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- Host: GitHub
- URL: https://github.com/illumina/illuminahumanmethylationmsamanifest
- Owner: Illumina
- Created: 2024-07-23T16:17:36.000Z (11 months ago)
- Default Branch: main
- Last Pushed: 2024-08-27T16:12:11.000Z (10 months ago)
- Last Synced: 2025-01-24T09:27:37.310Z (5 months ago)
- Language: R
- Size: 5.27 MB
- Stars: 0
- Watchers: 6
- Forks: 1
- Open Issues: 0
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Metadata Files:
- Readme: README.md
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README
# package for MSA Infinium DNA Methylation array and minfi compatibility
## Install from GitHub or from .tar.gz
```
library(devtools)
install_github('https://github.com/Illumina/IlluminaHumanMethylationMSAmanifest')
install.packages('IlluminaHumanMethylationMSAmanifest_0.1.0.tar.gz',repos=NULL,type='source')
```
## Run
```
#read intensities
MSA_example = read.metharray.exp(base='MSA_IDATs')
#assign annotation
annotation(MSA_example)["array"] = "IlluminaHumanMethylationMSA"
annotation(MSA_example)["annotation"] = "20a1.hg38"
#read beta into matrix
betas_msa_example= as.data.frame(getBeta(MSA_example))
```