https://github.com/illumina/primateai-3d

https://github.com/illumina/primateai-3d

Last synced: 2 months ago
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• Host: GitHub
• URL: https://github.com/illumina/primateai-3d
• Owner: Illumina
• License: other
• Created: 2023-03-10T21:11:38.000Z (over 2 years ago)
• Default Branch: main
• Last Pushed: 2025-02-25T18:57:16.000Z (4 months ago)
• Last Synced: 2025-04-02T12:11:16.196Z (3 months ago)
• Language: Python
• Size: 28.6 MB
• Stars: 65
• Watchers: 16
• Forks: 10
• Open Issues: 6
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        
# PrimateAI-3D

PrimateAI-3D scores and primate and human constraint are available at the PrimateAI-3D browser: 

https://primateai3d.basespace.illumina.com/

PrimateAI-3D scores are freely available for download for academic, non-profit research.  

[Please click here to accept the academic license agreement](https://illumina2.na1.adobesign.com/public/esignWidget?wid=CBFCIBAA3AAABLblqZhDaZSRjhLd-Jumb12j-ihAbO0vBakcvXgS2MpkFnF_VJXWW4J_DBF5yDTCzOQJ8zrU*)

This repository contains three subfolders:

 - primateAI-3D: code for the Primate-3D deep learning model

 - burden_tests: code for rare variant burden tests

 - rare_polygenic: code for rare variant polygenic scores

 - shet_estimation: code for Primate-3D based selection coefficient estimation