https://github.com/illustratien/toolstability
r package for calculating stability indices
https://github.com/illustratien/toolstability
analysis-package r reproducible-research stability
Last synced: 3 months ago
JSON representation
r package for calculating stability indices
- Host: GitHub
- URL: https://github.com/illustratien/toolstability
- Owner: Illustratien
- Created: 2019-08-20T09:40:38.000Z (over 6 years ago)
- Default Branch: master
- Last Pushed: 2025-07-23T14:13:56.000Z (6 months ago)
- Last Synced: 2025-10-22T03:48:11.429Z (3 months ago)
- Topics: analysis-package, r, reproducible-research, stability
- Language: R
- Homepage: https://illustratien.github.io/toolStability/
- Size: 3.81 MB
- Stars: 1
- Watchers: 3
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.Rmd
- Changelog: NEWS.md
Awesome Lists containing this project
README
---
output: rmarkdown::github_document
always_allow_html: true
---
```{r, echo = FALSE}
knitr::opts_chunk$set(
collapse = TRUE,
comment = "",
fig.path = "inst/extdata/"
)
```
## `toolStability`: Tool for Stability Indices Calculation 
```{r,echo = FALSE, message = FALSE}
suppressWarnings(devtools::load_all("."))
wholetext <- packageDescription("toolStability", fields = "Description")
Section<- strsplit(wholetext,"This R")
text1 <- Section[[1]][1]
text2 <- unlist(strsplit(paste0("This R",Section[[1]][2]),"\n"))
```
###### License: [GPL-3](https://www.r-project.org/Licenses/)
##### *Wang, T-C. and Chen, T-W.*
[](https://link.springer.com/article/10.1007/s00122-023-04264-7)
[](https://www.nature.com/articles/s41597-024-04332-7)
[](https://Illustratien.github.io/toolStability/)
[](https://zenodo.org/badge/latestdoi/203346020)
[](https://cran.r-project.org/)
[](https://github.com/Illustratien/toolStability)
[](https://app.codecov.io/gh/Illustratien/toolStability?branch=master)
[](https://github.com/Illustratien/toolStability/actions)
## Description
`r text1` `r "There are 11 stability indices in this package."`
`r text2[1]`
`r text2[2]`
`r text2[3]`
`r text2[4]`
`r text2[5]`
`r text2[6]`
## Installation
The package can be installed from CRAN as follows:
```{r, eval=FALSE}
install.packages('toolStability', dependencies=TRUE)
```
The development version can be installed from github as follows:
```{r, eval=FALSE}
if (!require('devtools')) install.packages('devtools')
devtools::install_github("Illustratien/toolStability")
# or
if (!require('remotes')) install.packages('remotes')
remotes::install_github("Illustratien/toolStability")
```
## Tutorial
There are 11 stability indices in this package. A detailed tutorial with examples and references:
[click here](https://illustratien.github.io/toolStability/articles/toolStability.html).
## What's new
To know whats new in this version type:
```{r, eval=FALSE}
news(package='toolStability')
```
## Links
[Main publication on TAAG](https://link.springer.com/article/10.1007/s00122-023-04264-7)
[Main publication analysis and visualization pipeline](https://github.com/Illustratien/Wang_2023_TAAG)
[Dataset documentation on Zenodo](https://doi.org/10.5281/zenodo.4729636)
[Package documentation on Zenodo](https://doi.org/10.5281/zenodo.5804212)
[CRAN page](https://cran.r-project.org/package=toolStability)
## Citing `toolStability`
To cite the methods in the package please use:
```{r, eval = FALSE}
Wang, TC., Casadebaig, P. & Chen, TW. More than 1000 genotypes are required to derive robust relationships between yield, yield stability and physiological parameters: a computational study on wheat crop. Theor Appl Genet 136, 34 (2023). https://doi.org/10.1007/s00122-023-04264-7
```