https://github.com/imamachi-n/rna-binding_protein_analysis

The analysis of RNA-binding proteins (RBPs)
https://github.com/imamachi-n/rna-binding_protein_analysis

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The analysis of RNA-binding proteins (RBPs)

• Host: GitHub
• URL: https://github.com/imamachi-n/rna-binding_protein_analysis
• Owner: Imamachi-n
• Created: 2013-03-29T12:25:21.000Z (over 11 years ago)
• Default Branch: master
• Last Pushed: 2015-12-22T04:49:03.000Z (almost 9 years ago)
• Last Synced: 2023-05-22T07:32:07.038Z (over 1 year ago)
• Language: Python
• Homepage:
• Size: 49.8 KB
• Stars: 0
• Watchers: 2
• Forks: 1
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

        
# RNA-binding proteins(RBPs) analysis

Shell scripts and python/R scritps for the analysis of RNA-binding proteins(RBPs) based on RBP-binding sites, miRNA-binding sites or its conservation.

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##Topics

-Simple motif finding  

-Conservation (phastCons46way/phyloP46way)  

-microRNA-binding sites analysis (TargetScan v7.0)  

-PAR-CLIP analysis (PARalyzer)