https://github.com/imcf/imcf-fiji-toolbars

:coffee: :microscope: :symbols: Fiji Action Bars provided by the IMCF.
https://github.com/imcf/imcf-fiji-toolbars

fiji image-processing imagej imageprocessing

Last synced: 30 days ago
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:coffee: :microscope: :symbols: Fiji Action Bars provided by the IMCF.

• Host: GitHub
• URL: https://github.com/imcf/imcf-fiji-toolbars
• Owner: imcf
• License: gpl-3.0
• Created: 2019-01-15T11:23:56.000Z (about 6 years ago)
• Default Branch: master
• Last Pushed: 2021-04-09T07:54:44.000Z (almost 4 years ago)
• Last Synced: 2024-11-11T03:12:51.001Z (3 months ago)
• Topics: fiji, image-processing, imagej, imageprocessing
• Language: ImageJ Macro
• Homepage:
• Size: 171 KB
• Stars: 0
• Watchers: 7
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • Contributing: CONTRIBUTING.md
  • License: LICENSE.txt

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README

        
# Fiji Action Bars provided by the IMCF :coffee: :microscope: :symbols:

[![Build Status](https://travis-ci.com/imcf/imcf-fiji-toolbars.svg?branch=master)](https://travis-ci.com/imcf/imcf-fiji-toolbars)

[![DOI](https://zenodo.org/badge/165838781.svg)](https://zenodo.org/badge/latestdoi/165838781)

This repository contains various [Action Bars][1] for [Fiji][2], most notably:

## The **IMCF Toolbar**

![IMCF Toolbar](screenshots/imcf-toolbar.png)

providing shortcuts to

- [Bio-Formats][3] Importer and Exporter

- ***OMERO Toolbar***

- Brightness & Contrast, Channels Tool

- Automatic Hyperstack Display Settings

- Orthogonal Views

- ***LUT Toolbar*** (see below)

- Batch X-To-Y Converter

- Histogram

- Image Calculator

- Median and Gaussian Filters

- ***Segmentation Toolbar***

- Script Interpreter

- Close All Image Windows

## The **LUT Toolbar**

providing quick access to a number of useful Look-Up-Tables

- False-Color: *Fire*, *Ice*, *Cool*, *Physics*, *Spectrum*

- Intensity-Preserving: *MPL Plasma* and *Viridis*

- Monochromatic: *Greys*, *Red*, *Green*, *Blue*

- Saturation / Offset highlighting: *Glow*, *HiLo*

- Label Image / Count Masks: *Glasbey On Dark*

- plus an extra popup-bar showing all available LUTs

- a shortcut to the *Calibration Bar* command

[1]: http://imagejdocu.tudor.lu/doku.php?id=plugin:utilities:action_bar:start

[2]: https://fiji.sc

[3]: https://imagej.net/Bio-Formats