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https://github.com/imcf/python-micrometa
:coffee: :snake: :microscope: Package for processing metadata from various light-microscopy related data formats.
https://github.com/imcf/python-micrometa
imagej2 jython jython-library python27
Last synced: about 2 months ago
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:coffee: :snake: :microscope: Package for processing metadata from various light-microscopy related data formats.
- Host: GitHub
- URL: https://github.com/imcf/python-micrometa
- Owner: imcf
- Created: 2018-10-12T20:55:37.000Z (about 6 years ago)
- Default Branch: master
- Last Pushed: 2024-02-21T15:59:45.000Z (10 months ago)
- Last Synced: 2024-03-26T21:50:23.736Z (9 months ago)
- Topics: imagej2, jython, jython-library, python27
- Language: Python
- Homepage:
- Size: 166 KB
- Stars: 1
- Watchers: 7
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
- Contributing: CONTRIBUTING.md
Awesome Lists containing this project
README
# MicroMeta 🐍 ☕ 🔬
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[](https://travis-ci.com/imcf/python-micrometa)
[](https://zenodo.org/badge/latestdoi/152806738)
## Microscopy Metadata processing
A Python package to process metadata from various light-microscopy related data
formats. Supports generating [ImageJ][1] macros for stitching mosaics / tilings.
Developed and provided by the [Imaging Core Facility (IMCF)][imcf] of the
Biozentrum, University of Basel, Switzerland.
The code is pure Python and known to work with CPython and Jython, so the
package can also be imported in [ImageJ Jython scripts][2].
## Packaging
The package is intended to be available in two flavours, as a mavenized version
(packaged as a jar) to be used in [ImageJ][1], as well as a "pure" Python
package to be provided through [PyPI][3].
[imcf]: https://www.biozentrum.unibas.ch/imcf
[1]: https://imagej.net
[2]: https://imagej.net/Jython_Scripting
[3]: https://pypi.org/