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https://github.com/inab/openebench_vre

benchmarking openebench scientific vre

Last synced: 5 days ago
JSON representation

Host: GitHub
URL: https://github.com/inab/openebench_vre
Owner: inab
License: apache-2.0
Created: 2020-01-27T16:34:11.000Z (almost 5 years ago)
Default Branch: master
Last Pushed: 2023-04-19T20:08:25.000Z (over 1 year ago)
Last Synced: 2024-04-15T09:21:03.065Z (7 months ago)
Topics: benchmarking, openebench, scientific, vre
Language: PHP
Size: 25.3 MB
Stars: 1
Watchers: 7
Forks: 1
Open Issues: 5
Metadata Files:
- Readme: README.md
- Changelog: CHANGELOG
- License: LICENSE

Awesome Lists containing this project

README

        Virtual Research Environment 

=========

VRE is a web-based collaborative working environment providing its users with a set of ready-to-use services (datasets, analysis tools and visualizaters) for supporting a research lifecycle. It is written in PHP, HTML and Javascript.

### Flavors

Several research projects has adopted the VRE framework for its project-specific purposes. For example:

- MuG : https://vre.multiscalegenomics.eu

- OpenEBench : https://openebench.bsc.es/vre

### Code structure

- composer.json: 3rd party software requirements

- [config](./config) : configuration files 

	- [settings](.config/globals.inc.php) global application file

	- [conf](.config/) files for credentials : mail, db, oauth2, etc

	- [bootstrap](.config/bootstrap.php) VRE application

- [install](./install) : installation instructions and data 

	- [install](./install/INSTALL) instructions

	- [database](./install/INSTALL) skeleton with structural collections

	- [data](./install/INSTALL) datasets and sample schemas

- [logs](./logs) : paths for VRE logging files

- [public](./public) : web application elements

	- **web pages**

	- [home](./public/home) pages for 'Homepage' section

	- [workspace](./public/workpace) pages for 'User Workspace' section

	- [getdata](./public/getdata) pages for 'Get Data' section

	- [launch](./public/launch) pages for 'Run Tool / Visualizers' section

	- [help](./public/help) pages for 'Help' section

	- [helpdesk](./public/helpdesk) pages for 'Helpdesk' section

	- [admin](./public/admin) pages for 'Admin' section

	- [user](./public/user) pages for 'User Profile' section

	- [cookies](./public/cookies) notification

	- **libraries**

	- [applib](./public/applib) : pages' backend

	- [assets](./public/assets) : pages' client scripts

	- [phplib](./public/phplib) : VRE libraries and classes

	- [htmlib](./public/htmlib) : html templates

	- **content**

	- [tools](./public/tools) : web form, assets and summart page for integrated tools

	- [visualizers](./public/visualizers) : visualizers code

- [scripts](./scripts) : maintainance scripts