https://github.com/ineelhere/bioinformatics
Exploring Bioinformatics pipelines
https://github.com/ineelhere/bioinformatics
bioinformatics fastqc multiqc nextflow rna-seq
Last synced: 4 months ago
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Exploring Bioinformatics pipelines
- Host: GitHub
- URL: https://github.com/ineelhere/bioinformatics
- Owner: ineelhere
- Created: 2021-07-17T12:53:58.000Z (almost 5 years ago)
- Default Branch: main
- Last Pushed: 2021-08-12T07:52:27.000Z (almost 5 years ago)
- Last Synced: 2025-09-11T19:39:20.667Z (9 months ago)
- Topics: bioinformatics, fastqc, multiqc, nextflow, rna-seq
- Language: HTML
- Homepage: https://ineelhere.github.io/bioinformatics/
- Size: 1.91 MB
- Stars: 0
- Watchers: 2
- Forks: 1
- Open Issues: 0
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Metadata Files:
- Readme: README.md
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README
## Exploring Bioinformatics
**Resources and other info**
* Nextflow training
- Documentation available at https://www.nextflow.io/docs/latest/index.html
- Steps for RNA seq pipeline available at https://seqera.io/training/
- Datafiles for RNA Seq pipeline available at https://github.com/nextflow-io/nf-hack17-tutorial/tree/master/data/ggal
- Scripts have been modified and uploaded accordingly with the same names
- Docker : https://hub.docker.com/r/nextflow/rnaseq-nf
- Samlmon : https://combine-lab.github.io/salmon/
- FastQC : https://www.bioinformatics.babraham.ac.uk/projects/fastqc/
- Multiqc : https://multiqc.info/
- Results available as a multiqc report at https://ineelhere.github.io/bioinformatics/