https://github.com/innovate-invent/bampy

Python implementation of htslib supporting BAM, SAM, and BGZF compression
https://github.com/innovate-invent/bampy

bai bam bgzf hts htslib sam samtools

Last synced: 5 months ago
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Python implementation of htslib supporting BAM, SAM, and BGZF compression

• Host: GitHub
• URL: https://github.com/innovate-invent/bampy
• Owner: innovate-invent
• License: mit
• Created: 2018-01-07T08:09:55.000Z (over 8 years ago)
• Default Branch: master
• Last Pushed: 2018-09-15T00:34:35.000Z (over 7 years ago)
• Last Synced: 2025-10-26T07:56:25.516Z (7 months ago)
• Topics: bai, bam, bgzf, hts, htslib, sam, samtools
• Language: Python
• Size: 155 KB
• Stars: 1
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.rst
  • License: LICENSE

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README

          
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bampy

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Python implementation of htslib supporting BAM, SAM, and BGZF compression

Notes

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- This is a raw initial release and is largely untested.

- Missing some features such as seamlessly handling long CIGAR strings

- Code documentation in progress

- Basically I just wanted to put this out there and most should sit tight until version 1.0.0