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https://github.com/insightsengineering/tern

Table, Listings, and Graphs (TLG) library for common outputs used in clinical trials
https://github.com/insightsengineering/tern

clinical-trials graphs listings nest outputs r tables

Last synced: 1 day ago
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Table, Listings, and Graphs (TLG) library for common outputs used in clinical trials

Host: GitHub
URL: https://github.com/insightsengineering/tern
Owner: insightsengineering
License: other
Created: 2021-07-05T21:43:32.000Z (about 3 years ago)
Default Branch: main
Last Pushed: 2024-04-19T19:59:47.000Z (5 months ago)
Last Synced: 2024-04-19T21:15:36.790Z (5 months ago)
Topics: clinical-trials, graphs, listings, nest, outputs, r, tables
Language: R
Homepage: https://insightsengineering.github.io/tern/
Size: 209 MB
Stars: 69
Watchers: 23
Forks: 16
Open Issues: 68
Metadata Files:
- Readme: README.md
- Contributing: .github/CONTRIBUTING.md
- License: LICENSE
- Code of conduct: .github/CODE_OF_CONDUCT.md
- Security: SECURITY.md

Awesome Lists containing this project

top-pharma50 - **insightsengineering/tern** - trials`, `graphs`, `listings`, `nest`, `outputs`, `r`, `tables`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 71 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 17 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> R <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> Other <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2024-06-04 22:41:07 | (Ranked by starred repositories)
top-pharma50 - **insightsengineering/tern** - trials`, `graphs`, `listings`, `nest`, `outputs`, `r`, `tables`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 71 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 17 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> R <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> Other <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2024-06-04 22:41:07 | (Ranked by starred repositories)

README

        # tern 

[![Check 🛠](https://github.com/insightsengineering/tern/actions/workflows/check.yaml/badge.svg)](https://insightsengineering.github.io/tern/main/unit-test-report/)

[![Docs 📚](https://github.com/insightsengineering/tern/actions/workflows/docs.yaml/badge.svg)](https://insightsengineering.github.io/tern/)

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[![Current Version](https://img.shields.io/github/r-package/v/insightsengineering/tern/main?color=purple\&label=package%20version)](https://github.com/insightsengineering/tern/tree/main)

[![Open Issues](https://img.shields.io/github/issues-raw/insightsengineering/tern?color=red\&label=open%20issues)](https://github.com/insightsengineering/tern/issues?q=is%3Aissue+is%3Aopen+sort%3Aupdated-desc)

The `tern` R package contains analysis functions to create tables and graphs used for clinical trial reporting.

The package provides a large range of functionality, such as:

Data visualizations:

-   Line plots ([`g_lineplot`](https://insightsengineering.github.io/tern/latest-tag/reference/g_lineplot.html))

-   Kaplan-Meier plots ([`g_km`](https://insightsengineering.github.io/tern/latest-tag/reference/g_km.html))

-   Forest plots ([`g_forest`](https://insightsengineering.github.io/tern/latest-tag/reference/g_forest.html))

-   STEP graphs ([`g_step`](https://insightsengineering.github.io/tern/latest-tag/reference/g_step.html))

-   Individual patient plots ([`g_ipp`](https://insightsengineering.github.io/tern/latest-tag/reference/g_ipp.html))

-   Waterfall plots ([`g_waterfall`](https://insightsengineering.github.io/tern/latest-tag/reference/g_waterfall.html))

Statistical model fit summaries:

-   Logistic regression ([`summarize_logistic`](https://insightsengineering.github.io/tern/latest-tag/reference/summarize_logistic.html))

-   Cox regression ([`summarize_coxreg`](https://insightsengineering.github.io/tern/latest-tag/reference/cox_regression.html))

Analysis tables:

-   See a list of all available analyze functions [here](https://insightsengineering.github.io/tern/latest-tag/reference/analyze_functions.html)

-   See a list of all available summarize functions [here](https://insightsengineering.github.io/tern/latest-tag/reference/summarize_functions.html)

-   See a list of all available column-wise analysis functions [here](https://insightsengineering.github.io/tern/latest-tag/reference/analyze_colvars_functions.html)

Many of these outputs are available to be added into [`teal`](https://insightsengineering.github.io/teal/) shiny applications for interactive exploration of data. These `teal` modules are available in the [`teal.modules.clinical`](https://insightsengineering.github.io/teal.modules.clinical/) package.

See the [TLG Catalog](https://insightsengineering.github.io/tlg-catalog/) for an extensive catalog of example clinical trial tables, listings, and graphs created using `tern` functionality.

## Installation

`tern` is available on CRAN and you can install the latest released version with:

```r

install.packages("tern")

```

or you can install the latest development version directly from GitHub by running the following:

```r

# install.packages("pak")

pak::pak("insightsengineering/tern")

```

## Usage

To understand how to use this package, please refer to the [Introduction to `tern`](https://insightsengineering.github.io/tern/latest-tag/articles/tern.html) article, which provides multiple examples of code implementation.

See package vignettes `browseVignettes(package = "tern")` for usage of this package.

## Related

- [`rtables`](https://insightsengineering.github.io/rtables/) - table engine used

- [`tlg-catalog`](https://insightsengineering.github.io/tlg-catalog/) - website showcasing many examples of clinical trial tables, listings, and graphs

- [`teal.modules.clinical`](https://insightsengineering.github.io/teal.modules.clinical/) - `teal` modules for interactive data analysis

## Acknowledgment

This package is a result of a joint efforts by many developers and stakeholders. We would like to thank everyone who has contributed so far!

## Stargazers and Forkers

### Stargazers over time

[![Stargazers over time](https://starchart.cc/insightsengineering/tern.svg)](https://starchart.cc/insightsengineering/tern)

### Stargazers

[![Stargazers repo roster for tern](https://reporoster.com/stars/insightsengineering/tern)](https://github.com/insightsengineering/tern/stargazers)

[![Forkers repo roster for tern](https://reporoster.com/forks/insightsengineering/tern)](https://github.com/insightsengineering/tern/network/members)