https://github.com/int-brain-lab/datajoint-ibl-gitops

DataJoint deployments for IBL's kubernetes cluster. Codebase for IBL Navigator located in: https://github.com/datajoint-company/ibl-navigator.
https://github.com/int-brain-lab/datajoint-ibl-gitops

Last synced: 2 months ago
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DataJoint deployments for IBL's kubernetes cluster. Codebase for IBL Navigator located in: https://github.com/datajoint-company/ibl-navigator.

• Host: GitHub
• URL: https://github.com/int-brain-lab/datajoint-ibl-gitops
• Owner: int-brain-lab
• License: mit
• Created: 2022-06-03T14:30:01.000Z (over 2 years ago)
• Default Branch: master
• Last Pushed: 2022-12-16T20:31:48.000Z (about 2 years ago)
• Last Synced: 2023-03-03T00:37:50.801Z (almost 2 years ago)
• Language: Shell
• Homepage:
• Size: 1.19 MB
• Stars: 0
• Watchers: 2
• Forks: 4
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        
# IBL Navigator

Deployments in this project have files split between multiple locations, to allow common files to be used by multiple deployments.

To apply or delete, run the following:

```bash

( export VISIBILITY= && export SUBDOMAIN= && kubectl -n ibl-navigator-${SUBDOMAIN}  -f k8s/deployments/navigator-${VISIBILITY}/${SUBDOMAIN} -f k8s/deployments/navigator-${VISIBILITY}/ )

```

If an entierly new deployment needs to be made, complete the following:

- create a new subdirectory in the navigator directory: `mkdir navigator/`

- establish a new namespace: `kubectl create namespace ibl-navigator-`

- set a DNS record in gandi of type CNAME, with name = your deployment, and having a hostname identical to that of `data`

- configure deployment files in your subdirectory

- apply deployment with `( export VISIBILITY= && export SUBDOMAIN= && kubectl -n ibl-navigator-${SUBDOMAIN}  -f navigator-${VISIBILITY}/${SUBDOMAIN} -f navigator-${VISIBILITY}/ )`

# Jupyterhub

install|update:

```bash

source k8s/deployments/jupyterhub/.env && helm upgrade --install jupyterhub jupyterhub/jupyterhub -n jhub --create-namespace --values k8s/deployments/jupyterhub/helm_config.yaml --set hub.config.GitHubOAuthenticator.client_id=${GITHUB_CLIENT_ID} --set hub.config.GitHubOAuthenticator.client_secret=${GITHUB_CLIENT_SECRET} --set hub.db.url=${JUPYTERHUB_DB_URL} --version "1.1.3" --devel --timeout 1h --debug #--wait --dry-run

```

remove:

```bash

helm delete jupyterhub -n jhub # && kubectl delete ns jupyterhub

```

note: deleting namespace is currently permanently breaking dns resolution for that ns (matching name)

# SciViz

Deployments in this project have files split between multiple locations, to allow common files to be used by multiple deployments.

To apply or delete, run the following:

```bash

( kubectl -n sci-viz-public apply -f k8s/deployments/sciviz/hpa.yaml -f k8s/deployments/sciviz/secret.yaml -f k8s/deployments/sciviz/public/sci-viz/ -f k8s/deployments/sciviz/public/pharus/ )

```