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https://github.com/intermine/flymine-bio-sources

Data sources for FlyMine
https://github.com/intermine/flymine-bio-sources

bioinformatics biology drosophila gene genetics java postgresql

Last synced: about 1 month ago
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Data sources for FlyMine

Host: GitHub
URL: https://github.com/intermine/flymine-bio-sources
Owner: intermine
Created: 2018-02-05T15:35:12.000Z (almost 7 years ago)
Default Branch: master
Last Pushed: 2022-01-24T14:43:54.000Z (almost 3 years ago)
Last Synced: 2024-04-09T21:05:55.903Z (9 months ago)
Topics: bioinformatics, biology, drosophila, gene, genetics, java, postgresql
Language: Java
Size: 839 KB
Stars: 1
Watchers: 8
Forks: 2
Open Issues: 0
Metadata Files:
- Readme: README.md

Awesome Lists containing this project

README

        FlyMine

============

Master: [![FlyMine bio sources CI](https://github.com/intermine/flymine-bio-sources/workflows/FlyMine%20bio%20sources%20CI/badge.svg?branch=master)](https://github.com/intermine/flymine-bio-sources/actions?query=workflow%3A%22FlyMine+bio+sources+CI%22)

[![Version](http://img.shields.io/badge/version-2.0.0-blue.svg?style=flat)](https://github.com/intermine/intermine/releases)

[![License](http://img.shields.io/badge/license-LGPL_2.1-blue.svg?style=flat)](https://github.com/intermine/intermine/blob/master/LICENSE)

[![Research software impact](http://depsy.org/api/package/pypi/intermine/badge.svg)](http://depsy.org/package/python/intermine)

[![Conda](https://anaconda.org/intermine/intermine/badges/installer/conda.svg)](https://anaconda.org/bioconda/intermine)

This is a repository of all the data parsers used to load Drosophila data into an InterMine instance (FlyMine). These are fly-specific data, and in addition to the [core data parsers](http://intermine.readthedocs.io/en/latest/database/data-sources/library/) available in InterMine. See the [intermine-scripts](http://github.com/intermine/intermine-scripts) respository for the scripts we use to actually download the fly data.

* [FlyMine](http://www.flymine.org)

* [FlyMine User Docs](http://flymine.readthedocs.io/en/latest/)

* [InterMine](http://www.intermine.org)

* [InterMine Docs](http://intermine.readthedocs.io/en/latest/)

Copyright and Licence

------------------------

Copyright (C) 2002-2018 FlyMine

See [LICENSE](LICENSE) file for licensing information.

This product includes software developed by the

[Apache Software Foundation][apache]

Please cite

------------------------

**InterMine: a flexible data warehouse system for the integration and analysis of heterogeneous biological data.**


*Smith RN, Aleksic J, Butano D, Carr A, Contrino S, Hu F, Lyne M, Lyne R, Kalderimis A, Rutherford K, Stepan R, Sullivan J, Wakeling M, Watkins X, Micklem G.* 


[Bioinformatics (2012) 28 (23): 3163-3165.](http://bioinformatics.oxfordjournals.org/content/28/23/3163.abstract) 


[![doi](http://img.shields.io/badge/doi-10.1093%2Fbioinformatics%2Fbts577-blue.svg?style=flat)](http://bioinformatics.oxfordjournals.org/content/28/23/3163.abstract) 

[![pubmed](http://img.shields.io/badge/pubmed-23023984-blue.svg?style=flat)](http://www.ncbi.nlm.nih.gov/pubmed/23023984)

[readthedocs]: http://intermine.readthedocs.org/en/latest

[tutorial]: http://intermine.readthedocs.org/en/latest/get-started/tutorial

[psql]: http://www.postgresql.org

[java]: http://openjdk.java.net

[apache]: http://www.apache.org

[tomcat]: http://tomcat.apache.org/download-70.cgi