https://github.com/intermine/ncbi-sequence-grabber

to download sequences for CovidMine
https://github.com/intermine/ncbi-sequence-grabber

Last synced: 9 months ago
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to download sequences for CovidMine

• Host: GitHub
• URL: https://github.com/intermine/ncbi-sequence-grabber
• Owner: intermine
• License: lgpl-3.0
• Created: 2020-06-22T08:53:13.000Z (about 6 years ago)
• Default Branch: master
• Last Pushed: 2021-05-30T19:20:50.000Z (about 5 years ago)
• Last Synced: 2025-03-13T02:16:13.434Z (over 1 year ago)
• Language: JavaScript
• Size: 43 KB
• Stars: 0
• Watchers: 7
• Forks: 0
• Open Issues: 2
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

          
# ncbi-sequence-grabber

to download sequences for CovidMine

Uses puppeteer to download the sequence file we need.

## Developers

You must have nodejs and npm.

1. Clone this repo.

2. Change into the directory.

3. Run `npm install` to install dependencies.

4. Run the script with `npm start`.

When the script exits, you should have a file named *sequences.fasta*. Move this file to wherever you need it. Further invocations will delete the file and redownload it. The script will exit with code 1 if it's not successful.