https://github.com/intermine/standard-model

staging place for extensions of intermine 'core' model (standard data model)
https://github.com/intermine/standard-model

Last synced: 15 days ago
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staging place for extensions of intermine 'core' model (standard data model)

• Host: GitHub
• URL: https://github.com/intermine/standard-model
• Owner: intermine
• Created: 2017-04-01T18:35:50.000Z (almost 9 years ago)
• Default Branch: master
• Last Pushed: 2017-04-02T21:59:15.000Z (almost 9 years ago)
• Last Synced: 2025-01-19T18:52:32.863Z (12 months ago)
• Size: 4.88 KB
• Stars: 0
• Watchers: 11
• Forks: 1
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • Contributing: CONTRIBUTING.md

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README

          
# standard-model

staging place for extensions of intermine 'core' model (standard data model)

Please place your proposed standard extension in an appropriate directory, or create a new one if necessary.

For the moment the directories are organised as the 'aspects' used in a mine web interface, plus a core directory.

## core

**so_term_list.txt**: list of Sequence Ontology (SO) entities used in intermine 

**core.xml**: intermine core model

Author/Publication

Data source/set

Ontology

BioEntity/SequenceFeature

Protein

Organism

Synonym/xref

**genomics_additions.xml**: extension to the SO model (GeneFlankingRegion)

## Genomics

## Function

## Proteins

## Variation

## Disease

## Homology

## Interactions

## Expressions