https://github.com/j-e-j-s/pyminer

A Python CLI for Mining Scientific Literature.
https://github.com/j-e-j-s/pyminer

cli data-mining data-mining-python python research science-research

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A Python CLI for Mining Scientific Literature.

• Host: GitHub
• URL: https://github.com/j-e-j-s/pyminer
• Owner: J-E-J-S
• License: other
• Created: 2019-12-12T09:41:34.000Z (almost 5 years ago)
• Default Branch: master
• Last Pushed: 2021-12-15T12:47:18.000Z (almost 3 years ago)
• Last Synced: 2024-05-30T22:49:49.670Z (5 months ago)
• Topics: cli, data-mining, data-mining-python, python, research, science-research
• Language: Python
• Homepage:
• Size: 30.8 MB
• Stars: 3
• Watchers: 1
• Forks: 1
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        
## Pyminer: A Python CLI for Mining Scientific Literature. 🔬⛏

![](/assets/pyminer.gif)

### Prerequisites:

- Python >=3.8

- Nodejs >=14.0

### Quickstart:

```

pip install journal-miner

```

### Usage:

```

Usage: pyminer [OPTIONS] QUERY

  Arguments:

  QUERY The main search string.

Options:

  -l, --limit INTEGER   Number of papers to mine. Default = 1000

  -kw, --keywords LIST  Keyword to mine.

  -v, --version         Show version number and exit.

  --help                Show this message and exit.

```

e.g.

```

pyminer 'RNA polymerase III' -kw inhibitor -kw 'TATA box' -kw enzyme -l 100

```

### Output:

Output forms a .csv file that can be viewed in Excel. Papers are automatically ranked by score being the total keyword frequency but can also be ranked by individual keywords or date in Excel.  

![](/assets/output.png)