https://github.com/j-w-yun/plasmid-planner

Automatically plan the most optimal expression vector using restriction enzymes.
https://github.com/j-w-yun/plasmid-planner

cloning dna-sequences microbiology molecular-biology plasmid plasmid-sequences restriction-enzyme

Last synced: about 7 hours ago
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Automatically plan the most optimal expression vector using restriction enzymes.

• Host: GitHub
• URL: https://github.com/j-w-yun/plasmid-planner
• Owner: j-w-yun
• License: mit
• Created: 2016-06-28T22:01:46.000Z (over 8 years ago)
• Default Branch: master
• Last Pushed: 2018-01-17T00:08:34.000Z (almost 7 years ago)
• Last Synced: 2024-03-01T05:07:40.536Z (9 months ago)
• Topics: cloning, dna-sequences, microbiology, molecular-biology, plasmid, plasmid-sequences, restriction-enzyme
• Language: Java
• Homepage:
• Size: 861 KB
• Stars: 4
• Watchers: 3
• Forks: 1
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

Awesome Lists containing this project

README

        
List of NEB enzymes retrieved from New England Biolabs 



# Snapshots

![alt tag](https://github.com/Jaewan-Yun/PlasmidPlanner/blob/master/pic/1.png)




![alt tag](https://github.com/Jaewan-Yun/PlasmidPlanner/blob/master/pic/2.png)




![alt tag](https://github.com/Jaewan-Yun/PlasmidPlanner/blob/master/pic/4.png)




![alt tag](https://github.com/Jaewan-Yun/PlasmidPlanner/blob/master/pic/5.png)




![alt tag](https://github.com/Jaewan-Yun/PlasmidPlanner/blob/master/pic/6.png)

Upgraded manual planning tool




![alt tag](https://github.com/Jaewan-Yun/PlasmidPlanner/blob/master/pic/7.png)

Automated planning interface




![alt tag](https://github.com/Jaewan-Yun/PlasmidPlanner/blob/master/pic/8.png)

Enumeration of all possible expression vector construction schemes. Automatically find the most optimal constructs.




## Citation

If you find this code useful for your research, please cite:

```

Narasimhan Jayanth Venkatachari

M.D. Ph.D.

Infectious Diseases and Microbiology

University of Pittsburgh

Jaewan Yun

Undergraduate Student

Molecular Biology, Chemistry, Computer Science

University of Pittsburgh

title = Plasmid Planner

year = 2017

publisher = GitHub

journal = GitHub repository

```