https://github.com/j77m/mveb_pac

source code for analysis of HGB activity, theta-gamma PAC and theta PLV
https://github.com/j77m/mveb_pac

Last synced: 13 days ago
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source code for analysis of HGB activity, theta-gamma PAC and theta PLV

• Host: GitHub
• URL: https://github.com/j77m/mveb_pac
• Owner: J77M
• Created: 2024-05-24T18:10:32.000Z (8 months ago)
• Default Branch: main
• Last Pushed: 2024-05-24T18:22:25.000Z (8 months ago)
• Last Synced: 2024-12-14T00:29:29.078Z (22 days ago)
• Language: MATLAB
• Size: 94.7 KB
• Stars: 0
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

        
# README

## Sections and folders/scripts

all preprocessing done using: analysis/preprocessingBIP.m

HGB analysis (section 2.7): analysys/HGB/

PAC analysis (section 2.8): analysis/PAC/

PLV analysis (section 2.9): analysis/PLV

## Figures and scripts

2.2 Locations of channels in MNI space: other_visualizations/bipolar_channels.m

2.3 Visualization of MarsAtlas labels: other_visualizations/atlases/MarsAtlas.m and other_visualizations/atlases/MarsAtlasColorLeg.m

2.4 Visualization of MarsAtlas regions: other_visualizations/atlases/MarsAtlasLobes.m

2.5 Visualization of Yeo7 networks: other_visualizations/atlases/yeo7_atlas.m

2.6 Channels distribution in brain atlases: other_visualizations/atlas_channels_distribution.m

2.7 Artificial signal with PAC :  other_visualizations/PAC_surrogate_components.m

2.8 Amplitude and phase of artificial signal:  other_visualizations/PAC_surrogate_components.m

2.9 Principles of PAC methods :  other_visualizations/PAC_surrogate_components.m

2.10 PAC methods sensitivity on artificial data :  analysis/PAC/artificial/artificial_compare.m

3.1 Behavioral results: analysis/behavioral.m

3.2 Memory-related HGB activations: analysis/HGB/visualization_HGB_channels.m,  analysis/HGB/HGB_selectivity.m, analysis/HGB/visualization_HGB_ROIs.m

3.3 Single channel spectrogram:  analysis/HGB/spectrogram.m

3.4 Memory-related theta-gamma PAC : analysis/PAC/visualization_PAC_channels.m, analysis/PAC/PAC_selectivity.m, analysis/PAC/visualization_PAC_ROIs.m

3.5 Theta-gamma PAC correlation for HGB memory-related ROIs: analysis/PAC/visualization_PAC_HGB_ROIs.m

3.6 Single channel phase-amplitude comodulogram: analysis/PAC/comodulogram.m

3.7 Theta PLV correlation with memory load for Yeo7 networks: analysis/PLV/visualization_yeo7.m

3.8 Theta PLV correlation with memory load for MarsAtlas labels areas : analysis/PLV/visualization_HGB_significant.m

3.9 Theta PLV correlation for HGB memory-related ROIs: analysis/PLV/visualization_PLV_HGB_ROIs.m

A.1 Brodmann areas of MarsAtlas labels: other_visualizations/atlases/MarsAtlasColorLegBA.m