https://github.com/jackhump/psp_gwas

Functional Genomics on the PSP GWAS
https://github.com/jackhump/psp_gwas

Last synced: 5 months ago
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Functional Genomics on the PSP GWAS

• Host: GitHub
• URL: https://github.com/jackhump/psp_gwas
• Owner: jackhump
• Created: 2023-10-12T22:11:07.000Z (over 2 years ago)
• Default Branch: main
• Last Pushed: 2024-07-05T21:02:11.000Z (almost 2 years ago)
• Last Synced: 2024-07-06T02:08:15.268Z (almost 2 years ago)
• Language: HTML
• Size: 3.92 MB
• Stars: 2
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

          
# Functional Genomics in a Genome-Wide Assocation Study of Progressive Supranuclear Palsy

Jack Humphrey, Ashvin Ravi & Kurt Farrell

Icahn School of Medicine at Mount Sinai, New York

2023-2024

![figure](https://github.com/jackhump/PSP_GWAS/raw/main/farrell_fig1.jpg)

## Manuscript

Currently preprinted on [MedRxiv](https://www.biorxiv.org/content/10.1101/2023.11.09.565552v1)

## Pre-processing code

All code to run COLOC, LDSC, TWAS, etc is located [here](https://github.com/RajLabMSSM/downstream-QTL)

## Analysis code and figures

R markdown scripts are in `scripts/`

knitted HTML files are in `docs/`