https://github.com/janclemenslab/ca_utils
Tools for recording and analyzing for Ca data
https://github.com/janclemenslab/ca_utils
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Last synced: over 1 year ago
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Tools for recording and analyzing for Ca data
- Host: GitHub
- URL: https://github.com/janclemenslab/ca_utils
- Owner: janclemenslab
- Created: 2019-01-30T17:06:56.000Z (over 7 years ago)
- Default Branch: master
- Last Pushed: 2024-11-12T12:05:57.000Z (over 1 year ago)
- Last Synced: 2025-02-03T18:19:16.794Z (over 1 year ago)
- Topics: scanimage
- Language: Python
- Homepage:
- Size: 1.52 MB
- Stars: 0
- Watchers: 3
- Forks: 0
- Open Issues: 4
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Metadata Files:
- Readme: README.md
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README
# Tools for analyzing for Ca data
## Installation
Create a conda environment
```python
mamba create -y -n ca ipykernel pyyaml matplotlib xarray tqdm pyside6 numba flammkuchen h5py defopt pyqtgraph qtpy seaborn napari -y -c conda-forge
conda activate ca
pip install git+https://github.com/janclemenslab/napari-tifffile-reader.git git+https://github.com/janclemenslab/ca_utils
```
## Usage
See `demo/demo.ipynb`.