https://github.com/janclemenslab/ca_utils

Tools for recording and analyzing for Ca data
https://github.com/janclemenslab/ca_utils

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Tools for recording and analyzing for Ca data

• Host: GitHub
• URL: https://github.com/janclemenslab/ca_utils
• Owner: janclemenslab
• Created: 2019-01-30T17:06:56.000Z (almost 6 years ago)
• Default Branch: master
• Last Pushed: 2024-11-12T12:05:57.000Z (3 months ago)
• Last Synced: 2024-11-12T13:18:53.857Z (3 months ago)
• Topics: scanimage
• Language: Python
• Homepage:
• Size: 1.52 MB
• Stars: 0
• Watchers: 3
• Forks: 0
• Open Issues: 4
• Metadata Files:
  • Readme: README.md

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README

        
# Tools for analyzing for Ca data

## Installation

Create a conda environment

```python

mamba create -y -n ca ipykernel pyyaml matplotlib xarray tqdm pyside6 numba flammkuchen h5py defopt pyqtgraph qtpy seaborn napari -y -c conda-forge

conda activate ca

pip install git+https://github.com/janclemenslab/napari-tifffile-reader.git git+https://github.com/janclemenslab/ca_utils

```

## Usage

See `demo/demo.ipynb`.