https://github.com/janeliascicomp/lightsheet-processing-pipeline
Pipeline from Philipp Keller (kellerp@janelia.hhmi.org) and group to process light-sheet microscopy data. Originated here: https://www.janelia.org/lab/keller-lab/software/efficient-processing-and-analysis-large-scale-light-sheet-microscopy-data
https://github.com/janeliascicomp/lightsheet-processing-pipeline
Last synced: 12 months ago
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Pipeline from Philipp Keller (kellerp@janelia.hhmi.org) and group to process light-sheet microscopy data. Originated here: https://www.janelia.org/lab/keller-lab/software/efficient-processing-and-analysis-large-scale-light-sheet-microscopy-data
- Host: GitHub
- URL: https://github.com/janeliascicomp/lightsheet-processing-pipeline
- Owner: JaneliaSciComp
- Created: 2017-10-16T15:17:47.000Z (over 8 years ago)
- Default Branch: master
- Last Pushed: 2019-10-24T20:11:52.000Z (over 6 years ago)
- Last Synced: 2025-01-01T05:29:25.898Z (about 1 year ago)
- Language: MATLAB
- Homepage:
- Size: 101 MB
- Stars: 3
- Watchers: 4
- Forks: 1
- Open Issues: 2
-
Metadata Files:
- Readme: README.md
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README
# Lightsheet-Processing-Pipeline
This repository is based on an updated version of the code from the following paper: https://www.nature.com/articles/nprot.2015.111.
Original code can also be found here: https://www.janelia.org/lab/keller-lab/software/efficient-processing-and-analysis-large-scale-light-sheet-microscopy-data.
# License
Copyright (c) 2019, Howard Hughes Medical Institute
All rights reserved.
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are met:
* Redistributions of source code must retain the above copyright
notice, this list of conditions and the following disclaimer.
* Redistributions in binary form must reproduce the above copyright
notice, this list of conditions and the following disclaimer in the
documentation and/or other materials provided with the distribution.
* Neither the name of the HHMI nor the
names of its contributors may be used to endorse or promote products
derived from this software without specific prior written permission.
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
DISCLAIMED. IN NO EVENT SHALL HHMI BE LIABLE FOR ANY
DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
(INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
(INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
# Authors
Original from original paper:
Fernando Amat: amatf@janelia.hhmi.org
Burkhard Höckendorf: hockendorfb@janelia.hhmi.org
Philipp Keller: kellerp@janelia.hhmi.org
Additional authors since publication:
David Ackerman: ackermand@janelia.hhmi.org
# Maintenance and Development
This project is currently being maintained and developed at HHMI's Janelia Research Campus: http://www.janelia.org.
# Contributions
Lightsheet-Processing-Pipeline includes code from the JSONlab project, by
Qianqian Fang (https://github.com/fangq/jsonlab). This code is covered
by its own copyright and licensing. We thank Dr. Fang for making it
publicly available.