https://github.com/jchiquet/sicomore-pkg

SIComORe: Selection of Interaction effects in COmpressed Multiple Omics REpresentation
https://github.com/jchiquet/sicomore-pkg

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SIComORe: Selection of Interaction effects in COmpressed Multiple Omics REpresentation

• Host: GitHub
• URL: https://github.com/jchiquet/sicomore-pkg
• Owner: jchiquet
• Created: 2018-07-24T09:43:13.000Z (over 6 years ago)
• Default Branch: master
• Last Pushed: 2020-04-04T06:58:56.000Z (almost 5 years ago)
• Last Synced: 2023-10-20T20:42:19.229Z (about 1 year ago)
• Language: R
• Homepage: https://jchiquet.github.io/sicomore-pkg/
• Size: 3.76 MB
• Stars: 4
• Watchers: 2
• Forks: 0
• Open Issues: 4
• Metadata Files:
  • Readme: README.md

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# SIComORe

Selection of Interaction effects in COmpressed Multiple Omics REpresentation

## Description 

From a set of input matrices and phenotype related to the same set of individual, sicomore is a two-step method which 1) find and select groups of correlated variables in each input matrix which are good predictors for the common phenotype; 2. find the most predictive interaction effects between the set of data by testing for interaction between the selected groups of each input matrix

## References

Guinot, F., Szafranski, M., Chiquet, J. & Ambroise, C. Fast Computation of Genome-Metagenome Interaction Effects, 2018. [link](https://arxiv.org/abs/1810.12169)