https://github.com/jeffasante/position-weight-matrix

Implementation of Position weight matrix on a DnaA 9-mers.
https://github.com/jeffasante/position-weight-matrix

bio-informatics position-weight-matrix

Last synced: about 1 month ago
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Implementation of Position weight matrix on a DnaA 9-mers.

• Host: GitHub
• URL: https://github.com/jeffasante/position-weight-matrix
• Owner: jeffasante
• License: mit
• Created: 2020-12-22T13:50:00.000Z (over 5 years ago)
• Default Branch: master
• Last Pushed: 2020-12-22T14:21:44.000Z (over 5 years ago)
• Last Synced: 2025-07-29T13:46:09.543Z (12 months ago)
• Topics: bio-informatics, position-weight-matrix
• Language: Go
• Homepage:
• Size: 235 KB
• Stars: 2
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

          
# position-weight-matrix

Implementation of Position weight matrix on a [DnaA 9-mers](https://en.wikipedia.org/wiki/DnaA).

## Concept

*[Position Weight Matrix or PWM](https://en.wikipedia.org/wiki/Position_weight_matrix) is one of the key bioinformatic tools used extensively in characterizing and predicting motifs in nucleotide and amino acid sequences.*

## Usage

***PWM** is frequently used to generate PWM for motif characterization and prediction. 

And can be extended to more advanced bioinformatic algorithms such as the [variable-order Bayesian network](https://en.wikipedia.org/wiki/Variable-order_Bayesian_network), [Gibbs sampler](https://en.wikipedia.org/wiki/Gibbs_sampling) and related algorithms based on the Monte Carlo method , MEME , and support vector machines.*