https://github.com/jefferis/gphys

R package to analyse electrophysiology data acquired by Neuromatic / Igor Pro
https://github.com/jefferis/gphys

analysis electrophysiology igor r

Last synced: about 2 months ago
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R package to analyse electrophysiology data acquired by Neuromatic / Igor Pro

• Host: GitHub
• URL: https://github.com/jefferis/gphys
• Owner: jefferis
• Created: 2013-08-19T19:50:37.000Z (over 11 years ago)
• Default Branch: master
• Last Pushed: 2024-06-12T15:02:29.000Z (6 months ago)
• Last Synced: 2024-10-12T21:29:45.103Z (2 months ago)
• Topics: analysis, electrophysiology, igor, r
• Language: R
• Homepage: https://jefferis.github.io/gphys
• Size: 2.13 MB
• Stars: 9
• Watchers: 4
• Forks: 4
• Open Issues: 5
• Metadata Files:
  • Readme: README.md

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README

        
# gphys

[![Build Status](https://travis-ci.org/jefferis/gphys.svg)](https://travis-ci.org/jefferis/gphys)

[![Docs](https://img.shields.io/badge/docs-100%25-brightgreen.svg)](https://jefferis.github.io/gphys/reference/)

[![DOI](https://zenodo.org/badge/12226078.svg)](https://zenodo.org/badge/latestdoi/12226078)

This R package provides relatively specialised routines for analysing electrophysiological data determined by the research in [our lab](http://jefferislab.org) using whole cell patch clamp techniques to analyse olfactory processing in the fly. Nevertheless it is possible that others, especially anyone using Jason Rothman's [Neuromatic](http://www.neuromatic.thinkrandom.com) data analysis and acquisition package for Igor Pro, may find some functionality useful. It can also be used to reproduce some of the analysis / figures in our published work

e.g. in the package [frulhns](https://github.com/jefferis/frulhns).

For further details see the R [DESCRIPTION](DESCRIPTION) file.

 

## Installation

Currently there isn't a released version on [CRAN](http://cran.r-project.org/).You can use 

the **devtools** package to install either the latest **release** or **development** version:

```r

# install devtools if required

install.packages("devtools")

library(devtools)

# latest release (recommended)

install_github("jefferis/gphys")

# develop branch may occasionally have changes that have not been merged to master

install_github("jefferis/gphys@develop")

```

Note: Windows users need [Rtools](http://www.murdoch-sutherland.com/Rtools/) and [devtools](http://CRAN.R-project.org/package=devtools) to install this way.

## Acknowledgements

This tool naturally depends on a number of other R packages including my own package [IgorR](https://github.com/jefferis/IgorR). However the most sophisticated and domain-specific dependency is the [STAR](http://cran.r-project.org/web/packages/STAR) package of Christophe Pouzat – this offers a great deal of exciting functionality that we hope to use in future.