https://github.com/jeffreypullin/rater

R package to fit statistical models to repeated categorical rating data using Stan
https://github.com/jeffreypullin/rater

annotations bayesian bayesian-statistics r r-package stan

Last synced: 2 months ago
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R package to fit statistical models to repeated categorical rating data using Stan

• Host: GitHub
• URL: https://github.com/jeffreypullin/rater
• Owner: jeffreypullin
• License: gpl-2.0
• Created: 2019-01-18T03:44:22.000Z (almost 6 years ago)
• Default Branch: master
• Last Pushed: 2023-09-11T19:22:16.000Z (over 1 year ago)
• Last Synced: 2024-03-19T11:04:07.454Z (9 months ago)
• Topics: annotations, bayesian, bayesian-statistics, r, r-package, stan
• Language: R
• Homepage: https://jeffreypullin.github.io/rater
• Size: 31.3 MB
• Stars: 17
• Watchers: 2
• Forks: 3
• Open Issues: 19
• Metadata Files:
  • Readme: README.Rmd
  • License: LICENSE

Awesome Lists containing this project

README

        
---

output: github_document

---

```{r setup, include=FALSE}

knitr::opts_chunk$set(echo = TRUE, fig.path = "man/figures/README-")

set.seed(1)

```

# rater 

[![CRAN_Status_Badge](https://www.r-pkg.org/badges/version/rater)](https://cran.r-project.org/package=rater)

[![R-CMD-check](https://github.com/jeffreypullin/rater/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/jeffreypullin/rater/actions/workflows/R-CMD-check.yaml)

[![Coverage status](https://codecov.io/gh/jeffreypullin/rater/branch/master/graph/badge.svg)](https://app.codecov.io/gh/jeffreypullin/rater?branch=master)

![pkgdown](https://github.com/jeffreypullin/rater/workflows/pkgdown/badge.svg)

**rater** provides tools for fitting and interrogating statistical models of repeated categorical rating data. The package provides a simple interface to fit a selection of these models, with arbitrary prior parameters, using MCMC and optimisation provided by [Stan](https://mc-stan.org/). A selection of functions are also provided to plot parts of these models and extract key parameters. 

## Example usage:

```{r fit-demo, message = FALSE, warning = FALSE, results = "hide"}

library(rater)

fit <- rater(anesthesia, "dawid_skene") # Sampling output suppressed.

```

Get the posterior mean of the "pi" parameter.

```{r extract-demo}

point_estimate(fit, "pi")

```

Plot the accuracy matrices of the raters.

```{r plot-demo}

plot(fit, "raters")

```

## Installation

**rater** requires the **rstan** package to fit models. Detailed instructions to install **rstan** can be found [here](https://github.com/stan-dev/rstan/wiki/RStan-Getting-Started)

### CRAN 

Install **rater** from CRAN with: 

```{r cran-installation, eval = FALSE}

install.packages("rater")

```

### Development

To install the development version of **rater** from GitHub run:

```{r dev-installation, eval = FALSE}

# install.packages("remotes")

remotes::install_github("jeffreypullin/rater")

```

#### Installation notes:

- When installing from source, i.e. when installing the development version or installing from CRAN on Linux, the **Stan** models in the package will be compiled - this will lead to an install time of few minutes. Please be patient - this compilation means that **no** compilation is required when using the package

- During compilation many warnings may be displayed in the terminal; these are harmless but impossible to suppress.