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https://github.com/jeksterslab/docker-bayes

Last synced: 15 days ago
JSON representation

Host: GitHub
URL: https://github.com/jeksterslab/docker-bayes
Owner: jeksterslab
Created: 2024-09-01T03:51:41.000Z (3 months ago)
Default Branch: main
Last Pushed: 2024-10-27T02:54:09.000Z (22 days ago)
Last Synced: 2024-10-27T03:44:54.340Z (22 days ago)
Language: R
Size: 19.5 KB
Stars: 0
Watchers: 1
Forks: 0
Open Issues: 0
Metadata Files:
- Readme: README.md

Awesome Lists containing this project

README

        jeksterslab/bayes

================

Ivan Jacob Agaloos Pesigan

2024-09-02

[![Make

Project](https://github.com/jeksterslab/docker-bayes/actions/workflows/make.yml/badge.svg)](https://github.com/jeksterslab/docker-bayes/actions/workflows/make.yml)

[![Docker and Apptainer Build and Push

\[amd64/arm64\]](https://github.com/jeksterslab/docker-bayes/actions/workflows/docker-apptainer-build-push-amd64-arm64.yml/badge.svg)](https://github.com/jeksterslab/docker-bayes/actions/workflows/docker-apptainer-build-push-amd64-arm64.yml)

[![Docker and Apptainer Build and Push \[amd64/arm64\]

(Weekly)](https://github.com/jeksterslab/docker-bayes/actions/workflows/docker-apptainer-build-push-weekly-amd64-arm64.yml/badge.svg)](https://github.com/jeksterslab/docker-bayes/actions/workflows/docker-apptainer-build-push-weekly-amd64-arm64.yml)

[![Shell

Check](https://github.com/jeksterslab/docker-bayes/actions/workflows/shellcheck.yml/badge.svg)](https://github.com/jeksterslab/docker-bayes/actions/workflows/shellcheck.yml)

## Description

Docker and Apptainer/Singularity containers for `R` projects based on

the [Rocker Project](https://rocker-project.org/) with packages for

Bayesian analysis.

## GitHub Actions

The `Docker and Apptainer Build and Push [amd64/arm64]` GitHub actions

workflow performs the following:

- Builds the Docker image specified by the `Dockerfile`.

- Pushes the image to

  [DockerHub](https://hub.docker.com/r/jeksterslab/bayes) using the tags

  `latest` and `date and time of build (YEAR-MM-DD-HHMMSSMS)`.

- Builds the Singularity Image File (SIF) using Apptainer based on the

  Docker Hub image from the previous step.

- Creates a GitHub release named `bayes-YEAR-MM-DD-HHMMSSMS`. Note that

  `bayes-YEAR-MM-DD-HHMMSSMS.zip` contains the SIF.

## Docker Container

To launch `Rstudio Server`, run the following.

``` bash

docker run --rm -ti -e PASSWORD=yourpassword -p 127.0.0.1:8787:8787 jeksterslab/bayes

```

Open `http://localhost:8787` on your web browser to launch

`Rstudio Server`.

- username: rstudio

- password: yourpassword

## Apptainer Shell

Download and unzip `bayes-YEAR-MM-DD-HHMMSSMS.zip` from the GitHub

release to extract `bayes-YEAR-MM-DD-HHMMSSMS.sif`.

``` bash

apptainer shell bayes-YEAR-MM-DD-HHMMSSMS.sif

```