https://github.com/jeksterslab/docker-dynr-rocker

A Docker container for R projects based on the Rocker Project with the dynr package.
https://github.com/jeksterslab/docker-dynr-rocker

Last synced: 15 days ago
JSON representation

A Docker container for R projects based on the Rocker Project with the dynr package.

• Host: GitHub
• URL: https://github.com/jeksterslab/docker-dynr-rocker
• Owner: jeksterslab
• Created: 2023-05-26T09:07:03.000Z (over 1 year ago)
• Default Branch: main
• Last Pushed: 2024-09-02T07:18:08.000Z (3 months ago)
• Last Synced: 2024-10-10T05:35:26.780Z (about 1 month ago)
• Language: Shell
• Homepage: https://hub.docker.com/r/jeksterslab/dynr-rocker
• Size: 61.5 KB
• Stars: 1
• Watchers: 2
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

Awesome Lists containing this project

README

        
jeksterslab/dynr-rocker

================

Ivan Jacob Agaloos Pesigan

2024-09-02

[![Make

Project](https://github.com/jeksterslab/docker-dynr-rocker/actions/workflows/make.yml/badge.svg)](https://github.com/jeksterslab/docker-dynr-rocker/actions/workflows/make.yml)

[![Docker and Apptainer Build and Push

\[amd64/arm64\]](https://github.com/jeksterslab/docker-dynr-rocker/actions/workflows/docker-apptainer-build-push-amd64-arm64.yml/badge.svg)](https://github.com/jeksterslab/docker-dynr-rocker/actions/workflows/docker-apptainer-build-push-amd64-arm64.yml)

[![Shell

Check](https://github.com/jeksterslab/docker-dynr-rocker/actions/workflows/shellcheck.yml/badge.svg)](https://github.com/jeksterslab/docker-dynr-rocker/actions/workflows/shellcheck.yml)

## Description

Docker and Apptainer/Singularity containers for `R` projects based on

the [Rocker Project](https://rocker-project.org/) with the

[dynr](https://github.com/mhunter1/dynr) package.

## GitHub Actions

The `Docker and Apptainer Build and Push [amd64/arm64]` GitHub actions

workflow performs the following:

- Builds the Docker image specified by the `Dockerfile`.

- Pushes the image to

  [DockerHub](https://hub.docker.com/r/jeksterslab/dynr-rocker) using

  the tags `latest` and `date and time of build (YEAR-MM-DD-HHMMSSMS)`.

- Builds the Singularity Image File (SIF) using Apptainer based on the

  Docker Hub image from the previous step.

- Creates a GitHub release named `dynr-rocker-YEAR-MM-DD-HHMMSSMS`. Note

  that `dynr-rocker-YEAR-MM-DD-HHMMSSMS.zip` contains the SIF.

## Docker Container

To launch `Rstudio Server`, run the following.

``` bash

docker run --rm -ti -e PASSWORD=yourpassword -p 127.0.0.1:8787:8787 jeksterslab/dynr-rocker

```

Open `http://localhost:8787` on your web browser to launch

`Rstudio Server`.

- username: rstudio

- password: yourpassword

## Apptainer Shell

Download and unzip `dynr-rocker-YEAR-MM-DD-HHMMSSMS.zip` from the GitHub

release to extract `dynr-rocker-YEAR-MM-DD-HHMMSSMS.sif`.

``` bash

apptainer shell dynr-rocker-YEAR-MM-DD-HHMMSSMS.sif

```