https://github.com/jervenbolleman/handlegraph4jrdf

Handlegraph RDF writers in java for working with variation graph genome data.
https://github.com/jervenbolleman/handlegraph4jrdf

biohackeu20 bioinformatics dna faldo rdf variation-graph vg

Last synced: 19 days ago
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Handlegraph RDF writers in java for working with variation graph genome data.

• Host: GitHub
• URL: https://github.com/jervenbolleman/handlegraph4jrdf
• Owner: JervenBolleman
• License: mit
• Created: 2020-11-22T22:31:33.000Z (about 4 years ago)
• Default Branch: main
• Last Pushed: 2023-10-27T14:08:33.000Z (about 1 year ago)
• Last Synced: 2024-05-19T07:42:14.035Z (8 months ago)
• Topics: biohackeu20, bioinformatics, dna, faldo, rdf, variation-graph, vg
• Language: Java
• Homepage:
• Size: 46.9 KB
• Stars: 3
• Watchers: 3
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE.md

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README

        
# Converts a GFA1 file to RDF

Using both the VG and FALDO ontologies it convers a GFA1 Genome Variation Graph into

a RDF graph.

To make a fat jar to run the program

```

mvn package

```

Then run with

```

java -jar target/handlegraph4j-rdf-0.1-jar-with-dependencies.jar 

```