https://github.com/jfjlaros/demultiplex

Versatile FASTA/FASTQ demultiplexer.
https://github.com/jfjlaros/demultiplex

demultiplex fasta fastq ngs

Last synced: 7 days ago
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Versatile FASTA/FASTQ demultiplexer.

• Host: GitHub
• URL: https://github.com/jfjlaros/demultiplex
• Owner: jfjlaros
• License: mit
• Created: 2018-03-26T13:19:27.000Z (over 6 years ago)
• Default Branch: master
• Last Pushed: 2024-05-29T19:20:14.000Z (6 months ago)
• Last Synced: 2024-11-07T21:08:28.912Z (13 days ago)
• Topics: demultiplex, fasta, fastq, ngs
• Language: Python
• Homepage:
• Size: 98.6 KB
• Stars: 32
• Watchers: 3
• Forks: 5
• Open Issues: 0
• Metadata Files:
  • Readme: README.rst
  • Contributing: docs/CONTRIBUTING.md
  • License: LICENSE.md
  • Code of conduct: docs/CODE_OF_CONDUCT.md

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README

        
Demultiplex: FASTA/FASTQ demultiplexer

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Versatile NGS demultiplexer with the following features:

- Support for FASTA and FASTQ files.

- Support for gzip and bzip2 compressed files.

- Support for multiple reads per fragment, e.g., paired-end.

- Handles barcodes in the header and in the reads.

- Handles barcodes at *unknown* locations in reads (e.g., PacBio or Nanopore

  barcodes).

- Support for selection of part of a barcode.

- Allows for mismatches, insertions and deletions.

- Barcode guessing by frequency or fixed amount.

- Handles large numbers (over one million) of barcodes.

Please see ReadTheDocs_ for the latest documentation.

.. _ReadTheDocs: https://demultiplex.readthedocs.io/en/latest/index.html