https://github.com/jfjlaros/tssv

Targeted characterisation of short structural variation.
https://github.com/jfjlaros/tssv

alignment amplicon counting edit-distance levenshtein primers tandem-repeats

Last synced: about 1 month ago
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Targeted characterisation of short structural variation.

• Host: GitHub
• URL: https://github.com/jfjlaros/tssv
• Owner: jfjlaros
• License: mit
• Created: 2018-03-01T11:01:19.000Z (almost 7 years ago)
• Default Branch: master
• Last Pushed: 2022-01-12T15:55:28.000Z (almost 3 years ago)
• Last Synced: 2024-10-12T23:42:26.337Z (2 months ago)
• Topics: alignment, amplicon, counting, edit-distance, levenshtein, primers, tandem-repeats
• Language: Python
• Homepage:
• Size: 243 KB
• Stars: 2
• Watchers: 2
• Forks: 1
• Open Issues: 1
• Metadata Files:
  • Readme: README.rst
  • Contributing: docs/CONTRIBUTING.md
  • License: LICENSE.md
  • Code of conduct: docs/CODE_OF_CONDUCT.md

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README

        
TSSV: Targeted characterisation of short structural variation

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TSSV is a program that does targeted characterisation of short structural

variation. It can be used for STR analysis, or any other type of targeted

analysis. It characterises any variation between a set of user-defined markers.

TSSV is platform-independent. It has been tested on Linux, macOS, and Windows.

Please see ReadTheDocs_ for the latest documentation.

.. _ReadTheDocs: https://tssv.readthedocs.io/en/latest/index.html