https://github.com/jhk0530/shinyCyJS

cytoscape.js R binding library for shiny
https://github.com/jhk0530/shinyCyJS

cytoscape cytoscapejs r shiny

Last synced: 2 months ago
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cytoscape.js R binding library for shiny

• Host: GitHub
• URL: https://github.com/jhk0530/shinyCyJS
• Owner: jhk0530
• License: other
• Created: 2019-03-04T10:44:51.000Z (almost 6 years ago)
• Default Branch: master
• Last Pushed: 2023-09-26T10:00:15.000Z (over 1 year ago)
• Last Synced: 2024-05-14T11:32:14.316Z (9 months ago)
• Topics: cytoscape, cytoscapejs, r, shiny
• Language: JavaScript
• Homepage: https://jhk0530.github.io/shinyCyJS/
• Size: 1.17 MB
• Stars: 8
• Watchers: 4
• Forks: 5
• Open Issues: 8
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

Awesome Lists containing this project

• awesome-shiny-extensions - shinyCyJS - Cytoscape.js R binding for Shiny. (Visualization / Network and Graph Data)

README

        
# shinyCyJS 

[![CRAN status badge](https://www.r-pkg.org/badges/version/shinyCyJS)](https://cran.r-project.org/web/packages/shinyCyJS/index.html)

[![shinyCyJS status badge](https://jhk0530.r-universe.dev/badges/shinyCyJS)](https://jhk0530.r-universe.dev/shinyCyJS)

[![Codecov test coverage](https://codecov.io/gh/jhk0530/shinyCyJS/graph/badge.svg)](https://app.codecov.io/gh/jhk0530/shinyCyJS)

shinyCyJS is R/Shiny Package to use cytoscape.js in R environment. 


cytoscape.js is a great javascript library for visualize/analysis Graph theory ( network ) 
 if you interested, please refer to this [Link](https://js.cytoscape.org/). 


shinyCyJS is built with cytoscape.js version 3.12.0. (2019/11)

## How to install :

From CRAN (1.0.0)

``` r

install.packages('shinyCyJS')

```

From r-universe (1.2.0)

```r

install.packages(

  "shinyCyJS",

  repos = c("https://jhk0530.r-universe.dev", "https://cloud.r-project.org")

)

```

## Example :

bulid Graph with node 4 = A, B, C, D and edge = A-B, B-C, C-D, B-D 


Code

``` r

library(shiny)

library(shinyCyJS)

ui <- function() {

  fluidPage(

    ShinyCyJSOutput(outputId = "cy")

  )

}

server <- function(input, output, session) {

  nodes <- data.frame(

    id = c("A", "B", "C", "D"),

    width = c(10, 20, 30, 40),

    height = c(10, 20, 30, 40)

  )

  edges <- data.frame(

    source = c("A", "B", "C", "D"),

    target = c("B", "C", "D", "B")

  )

  nodes <- buildElems(nodes, type = "Node")

  edges <- buildElems(edges, type = "Edge")

  obj <- shinyCyJS(c(nodes, edges))

  output$cy <- renderShinyCyJS(obj)

}

shinyApp(ui, server)

```



## Versions of Javascripts

 

see `inst/htmlwidgets/shinyCyJS.yaml`

## Used in

gatom package 


 netGO 

 GScluster 

## Suggest or comment

Make issue on [here](https://github.com/jhk0530/shinyCyJS/issues)