https://github.com/jhsmit/pymagej

Python tools for ImageJ
https://github.com/jhsmit/pymagej

Last synced: about 1 month ago
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Python tools for ImageJ

• Host: GitHub
• URL: https://github.com/jhsmit/pymagej
• Owner: Jhsmit
• License: gpl-2.0
• Created: 2015-07-23T14:11:59.000Z (almost 10 years ago)
• Default Branch: master
• Last Pushed: 2021-07-25T08:32:00.000Z (almost 4 years ago)
• Last Synced: 2025-03-22T10:17:02.175Z (about 2 months ago)
• Language: Python
• Size: 55.7 KB
• Stars: 13
• Watchers: 4
• Forks: 5
• Open Issues: 1
• Metadata Files:
  • Readme: README.md
  • License: LICENSE.md

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README

        
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# PymageJ

Python tools for ImageJ. 

Features: read/write ImageJ ROIs.

## How to use

**Reading ROI files:**

```python

from pymagej.roi import ROIDecoder

with ROIDecoder('roi_filepath.roi') as roi:

    roi_obj = roi.get_roi()

  

```

The returned ```roi_obj``` is an ROIObject depending on the type of ROI. Currently only reading rectangle and freehand are supported.

**Writing ROI files:**

```python

from pymagej.roi import ROIEncoder, ROIRect

roi_obj = ROIRect(20, 30, 40, 50) # Make ROIRect object specifing top, left, bottom, right

with ROIEncoder('roi_filepath.roi', roi_obj) as roi:

    roi.write()

  

```

Read/write is supported for the following ROI types:

- Polygon

- Rectangle

- Oval

- Line

- Freeline

- Polyline

- Freehand

See also: https://github.com/hadim/read-roi