https://github.com/jhsmit/smitsuite

Various tricks and tools to make life easier
https://github.com/jhsmit/smitsuite

Last synced: 21 days ago
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Various tricks and tools to make life easier

• Host: GitHub
• URL: https://github.com/jhsmit/smitsuite
• Owner: Jhsmit
• License: mit
• Created: 2018-05-30T12:13:08.000Z (over 6 years ago)
• Default Branch: master
• Last Pushed: 2019-07-04T17:46:35.000Z (over 5 years ago)
• Last Synced: 2024-10-15T18:50:54.416Z (about 1 month ago)
• Language: Python
• Size: 18.6 KB
• Stars: 0
• Watchers: 2
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        
# SmitSuite

Various tricks and tools to make life easier

This project was designed for personal use and is mostly copy/paste from various sources of the internet. Doesnt come with any warranty and most things won't work properly. Feel free to use at your own risk, but please cite the appropiate packages who do the heavy lifting:

### Scikit-Image 

Stéfan van der Walt, Johannes L. Schönberger, Juan Nunez-Iglesias, François Boulogne, Joshua D. Warner, Neil Yager, Emmanuelle Gouillart, Tony Yu and the scikit-image contributors. **scikit-image: Image processing in Python**, PeerJ 2:e453 (2014) [Link](https://peerj.com/articles/453/)

### Mahotas

Coelho, L.P. 2013. **Mahotas: Open source software for scriptable computer vision**. Journal of Open Research Software 1(1):e3, [DOI](http://dx.doi.org/10.5334/jors.ac)

### Symfit

Roelfs, M. Kroon, P. **Symbolic Fitting; fitting as it should be.** [DOI](http://doi.org/10.5281/zenodo.1133337)

### Matplotlib

Citation info [here](https://matplotlib.org/citing.html)

### Open Microscopy Environment (OME)

Citation info [here](https://www.openmicroscopy.org/citing-ome)

### Various stackoverflow answers and cookbooks:

- [Rolling window](http://stackoverflow.com/questions/6811183/rolling-window-for-1d-arrays-in-numpy)

- [Progress bar](http://stackoverflow.com/questions/3173320/text-progress-bar-in-the-console)

- [Drift correction](http://scikit-image.org/docs/dev/auto_examples/transform/plot_register_translation.html)

- [Gaussian fitting](https://scipy-cookbook.readthedocs.io/items/FittingData.html)

- [Headless ImageJ](http://forum.imagej.net/t/running-multiple-instances-of-imagej-simultaneously-on-windows-oss/1466)

- [Directory Listing](https://stackoverflow.com/questions/120656/directory-listing-in-python)