https://github.com/jianhuupenn/SpaGCN

SpaGCN: Integrating gene expression, spatial location and histology to identify spatial domains and spatially variable genes by graph convolutional network
https://github.com/jianhuupenn/SpaGCN

graph-convolutional-network spatial-domains spatial-transcriptomics spatially-variable-genes

Last synced: 11 months ago
JSON representation

SpaGCN: Integrating gene expression, spatial location and histology to identify spatial domains and spatially variable genes by graph convolutional network

• Host: GitHub
• URL: https://github.com/jianhuupenn/SpaGCN
• Owner: jianhuupenn
• License: mit
• Created: 2020-10-21T03:02:27.000Z (over 5 years ago)
• Default Branch: master
• Last Pushed: 2023-10-11T12:07:44.000Z (over 2 years ago)
• Last Synced: 2024-11-28T02:35:07.639Z (over 1 year ago)
• Topics: graph-convolutional-network, spatial-domains, spatial-transcriptomics, spatially-variable-genes
• Language: Python
• Homepage:
• Size: 54.1 MB
• Stars: 200
• Watchers: 2
• Forks: 59
• Open Issues: 24
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

Awesome Lists containing this project

• StarryDivineSky - jianhuupenn/SpaGCN
• awesome-single-cell - SpaGCN - [Python] SpaGCN is a graph convolutional network to integrate gene expression and histology to identify spatial domains and spatially variable genes. manuscript open access: [SpaGCN: Integrating gene expression, spatial location and histology to identify spatial domains and spatially variable genes by graph convolutional network](https://www.nature.com/articles/s41592-021-01255-8) (Software packages / Spatial transcriptomics)