https://github.com/jimhester/analysis_framework

A skeleton analysis framework for use with knitr and git.
https://github.com/jimhester/analysis_framework

Last synced: 26 days ago
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A skeleton analysis framework for use with knitr and git.

• Host: GitHub
• URL: https://github.com/jimhester/analysis_framework
• Owner: jimhester
• Created: 2013-04-18T13:35:52.000Z (almost 12 years ago)
• Default Branch: master
• Last Pushed: 2013-10-09T16:51:37.000Z (over 11 years ago)
• Last Synced: 2024-08-13T07:04:54.336Z (8 months ago)
• Language: Perl
• Size: 141 KB
• Stars: 6
• Watchers: 2
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

        
# Title #

Author: [Jim Hester](http://jimhester.com)

Created: 2013 Apr 02 03:17:40 PM

Last Modified: 2013 May 30 02:47:06 PM

A skeleton R analysis framework for use with knitr and git.

I like to abide by these guidelines to keep things organized.

* try to commit changes regularly!

* make a tag of the state if you send a plot/analysis to someone!

* all input data does in data/

* all intermediate files go in tmp/

* all tabulated,count,stat files go in output/

* any complied source code is put in src/, R code in R/ scripts in exec/

* each major task is split into a separate Rmd file and placed in the base directory

* every Rmd file is added as a child document to the full_report.Rmd

* I generally cache all my Rmd chunks, but to be safe set eval=F for very long

  running jobs after they have been run in case the cache is invalidated

  accidentally.

* For nice styled reports that work well with this framework see [knitr_bootstrap](https://github.com/jimhester/knitr_bootstrap).