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https://github.com/jimhester/wercker-step-r-dependencies
Wercker step to install R dependencies
https://github.com/jimhester/wercker-step-r-dependencies
Last synced: about 2 months ago
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Wercker step to install R dependencies
- Host: GitHub
- URL: https://github.com/jimhester/wercker-step-r-dependencies
- Owner: jimhester
- Created: 2015-04-23T22:24:41.000Z (over 9 years ago)
- Default Branch: master
- Last Pushed: 2015-04-29T13:08:13.000Z (over 9 years ago)
- Last Synced: 2024-06-12T18:21:47.581Z (6 months ago)
- Language: Shell
- Size: 133 KB
- Stars: 4
- Watchers: 2
- Forks: 2
- Open Issues: 2
-
Metadata Files:
- Readme: README.md
Awesome Lists containing this project
README
# r-dependencies
[](https://app.wercker.com/project/bykey/897ade61fbdb92ac450cf84c4006a281)
A step to install R dependencies for a package. Best used with one of the
[rocker](https://registry.hub.docker.com/repos/rocker/) images.
If you want to install dependencies that are on Github use the `github_packages`
parameter.
```yaml
- jimhester/r-dependencies:
github_packages: jimhester/covr jimhester/lintr
```
## Options
* `github_packages` (optional). A list of additional Github dependencies to
install, separated by whitespace.
* `repos` (optional). Repos to set in R using `options(repos = XXX)`. If no
repos are set and `BiocInstaller` is included in your docker image
`BiocInstaller::biocinstallRepos()` will be used to set the repos.
## Example
Basic usage:
```
- jimhester/r-dependencies
```
If you want to install additional dependencies from Github.
```
- jimhester/r-dependencies:
github_packages: jimhester/covr jimhester/lintr
```
Setting non-default repositories.
```
- jimhester/r-dependencies:
repos: 'c(CRAN = "http://cran.rstudio.org", CRANxtras = "http://www.stats.ox.ac.uk/pub/RWin")'
```
# License
The MIT License (MIT)
Copyright (c) 2015 Jim Hester
Permission is hereby granted, free of charge, to any person obtaining a copy of
this software and associated documentation files (the "Software"), to deal in
the Software without restriction, including without limitation the rights to
use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of
the Software, and to permit persons to whom the Software is furnished to do so,
subject to the following conditions:
The above copyright notice and this permission notice shall be included in all
copies or substantial portions of the Software.
THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS
FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR
COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER
IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN
CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
# Changelog
## 0.0.9
- use run_script, add keyword
## 0.0.8
- load BiocInstaller quietly
## 0.0.7
- Github dependencies completely fixed now
## 0.0.6
- Github dependencies bug
## 0.0.5
- Fix bug with repos default value
## 0.0.4
- Add repos option and use BiocInstaller if it is available and repos are not
set.
## 0.0.3
- Shellcheck and explicitly check error status
## 0.0.2
- Correct silly typo
## 0.0.1
- initial release