https://github.com/jkanche/epiviz-demo

epiviz file server demo
https://github.com/jkanche/epiviz-demo

Last synced: 23 days ago
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epiviz file server demo

• Host: GitHub
• URL: https://github.com/jkanche/epiviz-demo
• Owner: jkanche
• Created: 2019-12-03T00:41:51.000Z (about 5 years ago)
• Default Branch: master
• Last Pushed: 2019-12-03T00:54:05.000Z (about 5 years ago)
• Last Synced: 2024-10-30T19:12:33.243Z (2 months ago)
• Language: HTML
• Size: 195 KB
• Stars: 0
• Watchers: 2
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

        
#### Interactively Query and Visualize Genomic data from flat files using Epiviz

- Define data sets (available locally or publicly) as a json configuration file - data.json

- Run the Epiviz File Server

    

    Install dependencies either through pip

    > $ pip install -r requirements.txt  

    or conda

    > $ conda env create --file=environment.yml

    > $ conda activate epivizfileserver

    The epiviz python script allows users to load data from the configuration file and define transformations

    > $ python epiviz.py 

    more information on the file server is available at - [Documentation](https://epivizfileparser.readthedocs.io/en/latest/index.html) or [GitHub](https://github.com/epiviz/epivizFileParser)

- Epiviz Components allows users to interactively visualize and embed tracks on most web based platforms that support HTML.

    - First create a directory

    > $ mkdir epiviz && cd

    

    - Use bower to install dependencies

    > $ bower init

    > $ bower install epiviz/epiviz-chart

    - Create an index.html file to add Epiviz Components that query data from the Epiviz file server, more information on components is available at [GitHub](https://github.com/epiviz/epiviz-chart)

- Use Caddy or any web server to serve the Components

    > $ cd epiviz && caddy

![Epiviz Components](./epiviz_charts.png "Epiviz Components")