https://github.com/jmandel/fhir-view-to-array

https://github.com/jmandel/fhir-view-to-array

Last synced: 2 months ago
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• Host: GitHub
• URL: https://github.com/jmandel/fhir-view-to-array
• Owner: jmandel
• Created: 2023-04-26T21:28:47.000Z (about 2 years ago)
• Default Branch: main
• Last Pushed: 2023-09-10T05:08:36.000Z (over 1 year ago)
• Last Synced: 2025-03-20T00:52:56.393Z (3 months ago)
• Language: HTML
• Homepage: https://joshuamandel.com/fhir-view-to-array/
• Size: 968 KB
• Stars: 0
• Watchers: 3
• Forks: 2
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

        
# fhir-view-to-array

Web demo at https://joshuamandel.com/fhir-view-to-array/

Or run CLI with Deno...

###  Generate a CSV file

```sh

cat pt.ndjson | \

deno run --allow-read generate-table.ts \

  --config patient-identifiers.json \

  --stdin \

> contacts.csv

```

Or pass a series of `--infile filename.ndjson` arguments to read from the filesystem.

###  Generate a sqlite table

Add or replace a table in `analysis.db` (creating the file if necessary)

```sh

deno run --allow-read --allow-write generate-table.ts \

  --config patient-identifiers.json \

  --infile pt.ndjson \

  --sqlite analysis.db

```

Use `--append` flag to append to an existing table.