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https://github.com/jni/platelet-unet-watershed

Last synced: 2 days ago
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Host: GitHub
URL: https://github.com/jni/platelet-unet-watershed
Owner: jni
License: bsd-3-clause
Created: 2021-05-26T03:30:45.000Z (over 3 years ago)
Default Branch: main
Last Pushed: 2022-01-27T22:38:10.000Z (over 2 years ago)
Last Synced: 2024-08-09T13:26:47.496Z (about 2 months ago)
Language: Python
Size: 67 MB
Stars: 4
Watchers: 3
Forks: 2
Open Issues: 2
Metadata Files:
- Readme: README.md
- License: LICENSE

Awesome Lists containing this project

README

        # platelet-unet-watershed

[![License](https://img.shields.io/pypi/l/platelet-unet-watershed.svg?color=green)](https://github.com/jni/platelet-unet-watershed/raw/master/LICENSE)

[![PyPI](https://img.shields.io/pypi/v/platelet-unet-watershed.svg?color=green)](https://pypi.org/project/platelet-unet-watershed)

[![Python Version](https://img.shields.io/pypi/pyversions/platelet-unet-watershed.svg?color=green)](https://python.org)

[![tests](https://github.com/jni/platelet-unet-watershed/workflows/tests/badge.svg)](https://github.com/jni/platelet-unet-watershed/actions)

[![codecov](https://codecov.io/gh/jni/platelet-unet-watershed/branch/master/graph/badge.svg)](https://codecov.io/gh/jni/platelet-unet-watershed)

Segment platelets with pretrained unet and affinity watershed

----------------------------------

This [napari] plugin was generated with [Cookiecutter] using with [@napari]'s [cookiecutter-napari-plugin] template.

## Installation

You can install `platelet-unet-watershed` via [pip]:

    pip install platelet-unet-watershed

## Contributing

Contributions are very welcome. Tests can be run with [tox], please ensure

the coverage at least stays the same before you submit a pull request.

## License

Distributed under the terms of the [BSD-3] license,

"platelet-unet-watershed" is free and open source software

## Issues

If you encounter any problems, please [file an issue] along with a detailed description.

[napari]: https://github.com/napari/napari

[Cookiecutter]: https://github.com/audreyr/cookiecutter

[@napari]: https://github.com/napari

[MIT]: http://opensource.org/licenses/MIT

[BSD-3]: http://opensource.org/licenses/BSD-3-Clause

[GNU GPL v3.0]: http://www.gnu.org/licenses/gpl-3.0.txt

[GNU LGPL v3.0]: http://www.gnu.org/licenses/lgpl-3.0.txt

[Apache Software License 2.0]: http://www.apache.org/licenses/LICENSE-2.0

[Mozilla Public License 2.0]: https://www.mozilla.org/media/MPL/2.0/index.txt

[cookiecutter-napari-plugin]: https://github.com/napari/cookiecutter-napari-plugin

[file an issue]: https://github.com/jni/platelet-unet-watershed/issues

[napari]: https://github.com/napari/napari

[tox]: https://tox.readthedocs.io/en/latest/

[pip]: https://pypi.org/project/pip/

[PyPI]: https://pypi.org/