https://github.com/jni/snemi-eval

Fiji Python script to evaluate training volumes for the SNEMI3D challenge
https://github.com/jni/snemi-eval

Last synced: 12 days ago
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Fiji Python script to evaluate training volumes for the SNEMI3D challenge

• Host: GitHub
• URL: https://github.com/jni/snemi-eval
• Owner: jni
• License: other
• Created: 2014-03-12T04:19:19.000Z (over 10 years ago)
• Default Branch: master
• Last Pushed: 2014-03-12T04:44:44.000Z (over 10 years ago)
• Last Synced: 2024-10-16T21:18:54.963Z (about 1 month ago)
• Language: Python
• Size: 148 KB
• Stars: 0
• Watchers: 3
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE.md

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README

        
snemi-eval

==========

A Fiji Python script to evaluate training volumes for the SNEMI3D challenge

This repo is combines Ignacio Arganda-Carreras's [Beanshell

script](http://brainiac2.mit.edu/SNEMI3D/sites/default/files/SNEMI3D-metrics.bsh)

with my [fiji-python repo](https://github.com/jni/fiji-python), which

encapsulates the advice given in my [February 2014 blog

post](http://ilovesymposia.com/2014/02/26/fiji-jython/) about writing

command-line tools for Fiji's Jython interpreter.

# Links

Here are some reference links for writing Fiji python scripts:

* [Fiji](http://fiji.sc/)

* [ImageJ API documentation](http://rsbweb.nih.gov/ij/developer/api/index.html)

* [BioFormats API

documentation](http://ci.openmicroscopy.org/job/BIOFORMATS-5.0-latest/javadoc/index.html)

* [Documentation for other common plugins](http://javadoc.imagej.net/)

* [ImageJ source code browser](http://rsb.info.nih.gov/ij/developer/source/)