https://github.com/joeroe/swasianeolithicfoundercrops
Data and code for Arranz-Otaegui & Roe (2023), "Revisiting the concept of the 'Neolithic Founder Crops' in southwest Asia'
https://github.com/joeroe/swasianeolithicfoundercrops
archaeology r research-compendium
Last synced: 2 months ago
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Data and code for Arranz-Otaegui & Roe (2023), "Revisiting the concept of the 'Neolithic Founder Crops' in southwest Asia'
- Host: GitHub
- URL: https://github.com/joeroe/swasianeolithicfoundercrops
- Owner: joeroe
- License: other
- Created: 2021-03-25T14:56:59.000Z (over 4 years ago)
- Default Branch: main
- Last Pushed: 2023-04-12T15:00:40.000Z (over 2 years ago)
- Last Synced: 2025-07-18T10:53:52.638Z (3 months ago)
- Topics: archaeology, r, research-compendium
- Language: PostScript
- Homepage: https://doi.org/10.1007/s00334-023-00917-1
- Size: 84.5 MB
- Stars: 6
- Watchers: 3
- Forks: 1
- Open Issues: 2
-
Metadata Files:
- Readme: README.Rmd
- License: LICENSE
- Citation: CITATION.cff
Awesome Lists containing this project
README
---
output: github_document
---
```{r setup, echo = FALSE}
knitr::opts_chunk$set(
collapse = TRUE,
comment = "#>",
fig.path = "README-"
)
```
# The "Neolithic Founder Crops" in Southwest Asia: Research Compendium
[](https://zenodo.org/badge/latestdoi/351475245)
[](https://mybinder.org/v2/gh/joeroe/SWAsiaNeolithicFounderCrops/main?urlpath=rstudio)
This repository contains the data and code for our paper:
> Arranz-Otaegui, Amaia, and Roe, Joe (2023). Revisiting the concept of the 'Neolithic Founder Crops' in southwest Asia. *Vegetation History & Archaeobotany*.
## Contents
The `analysis` directory contains:
- [:file\_folder: SI1.Rmd](/analysis/SI1.Rmd): R Markdown source
code for the supplement to our manuscript describing the quantitative
analysis. It includes code to reproduce the figures and tables generated by
the analysis.
- [:file\_folder: SI1.html](/analysis/SI1.html): rendered version
of the supplement in HTML format.
- [:file\_folder: SI1.pdf](/analysis/SI1.pdf): rendered version
of the supplement in PDF format.
- [:file\_folder: data](/analysis/data): Data used in the analysis.
- [:file\_folder: raw_data](/analysis/data/raw_data): Data from other sources –
see manuscript for attribution.
- [:file\_folder: derived_data](/analysis/data/derived_data): Collated and
processed dataset used for our analysis.
- [:file\_folder: figures](/analysis/figures): Individual figures and tables
generated in the analysis.
Additional R functions supporting the analysis are contained in the `R` directory.
## Run the compendium locally
This research compendium has been developed using the statistical programming
language R. To work with the compendium, you will need
installed on your computer the [R software](https://cloud.r-project.org/)
itself and optionally [RStudio Desktop](https://rstudio.com/products/rstudio/download/).
You can download the compendium as a zip from from this URL:
[master.zip](/archive/master.zip). After unzipping:
- open the `.Rproj` file in RStudio
- run `devtools::install()` to ensure you have the packages this analysis depends on (also listed in the
[DESCRIPTION](/DESCRIPTION) file).
- finally, open `analysis/analysis.Rmd` and 'knit' or run `rmarkdown::render("analysis/analysis.Rmd")` in the R console to produce the `analysis.html` and `analysis.pdf`.
## Citation
> Arranz-Otaegui, Amaia, and Roe, Joe (2023). Revisiting the concept of the 'Neolithic Founder Crops' in southwest Asia. *Vegetation History & Archaeobotany*.
In addition to our paper above, you can cite this compendium specifically as:
> Roe, Joe, & Arranz Otaegui, Amaia. (2023). The "Neolithic Founder Crops" in Southwest Asia: Research Compendium. *Zenodo*. https://doi.org/10.5281/zenodo.5911218>
## Licenses
**Text and figures:** [CC-BY-4.0](http://creativecommons.org/licenses/by/4.0/)
**Code:** See the [DESCRIPTION](DESCRIPTION) file
**Data:** [CC-0](http://creativecommons.org/publicdomain/zero/1.0/) attribution requested in reuse