https://github.com/johnlees/pmcmc
Parallel implementation of MCMC using MPI - coded by Hákon Jónsson, John Lees and Tobias Madsen
https://github.com/johnlees/pmcmc
Last synced: 10 months ago
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Parallel implementation of MCMC using MPI - coded by Hákon Jónsson, John Lees and Tobias Madsen
- Host: GitHub
- URL: https://github.com/johnlees/pmcmc
- Owner: johnlees
- License: gpl-2.0
- Created: 2014-08-18T09:12:46.000Z (almost 12 years ago)
- Default Branch: master
- Last Pushed: 2014-08-18T09:38:35.000Z (almost 12 years ago)
- Last Synced: 2023-10-20T20:48:29.085Z (over 2 years ago)
- Language: C
- Size: 1.42 MB
- Stars: 0
- Watchers: 2
- Forks: 0
- Open Issues: 0
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Metadata Files:
- Readme: README.md
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README
pMCMC
=====
Parallel implementation of MCMC using MPI - coded by Hákon Jónsson, John Lees and Tobias Madsen
Code is available as C++
Under testing implementations in R and Perl do not provide speedups due
to execution overheads, but are included as easier to read 'pseudocode'
if required.
Details can be found in a pre-print paper at http://leesjohn.wordpress.com/2014/08/18/parallel-mcmc/
Acknowledgements
----------------
This work was completed for the Oxford Summer School in Computational Biology 2012 (http://www.stats.ox.ac.uk/research/genome/summer_school_2013/osscb12), and was supervised by Geoff Nicholls, Joe Herman and Jotun Hein.
Funding provided by a Wellcome Trust Vacation grant (JL) and COGANGS
- EU grant (HJ, TM).