https://github.com/jolideco/jolideco-comparison

Comparison of Jolideco against other deconvolution methods.
https://github.com/jolideco/jolideco-comparison

Last synced: about 1 month ago
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Comparison of Jolideco against other deconvolution methods.

• Host: GitHub
• URL: https://github.com/jolideco/jolideco-comparison
• Owner: jolideco
• License: bsd-3-clause
• Created: 2023-03-22T18:33:47.000Z (almost 2 years ago)
• Default Branch: main
• Last Pushed: 2024-02-16T17:23:00.000Z (10 months ago)
• Last Synced: 2024-04-25T07:21:48.252Z (8 months ago)
• Language: Python
• Homepage: https://jolideco.github.io/jolideco-comparison/
• Size: 510 MB
• Stars: 0
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        
# Jolideco Comparison

Compare Jolideco against other deconvolution methods.

## Get Started

Get the data:

TODO: upload data to Zenodo and extend workflow to download it...or just submit...it is small.

Setup the environment:

```bash

mamba env create -f environment.yaml

```

Run comparison:

```bash

snakemake -c --cluster workflow/cluster/qsub-submit.py --jobs 

```

Open webpage:

```

open site/index.html

```

## More useful commands

Clean up a failed run:

```

git clean -fdx -e data/

```

Command to just rebuild the site:

```bash

snakemake -c8 -R site_render_index

```