https://github.com/jpaggi/labranchor
LaBranchoR predicts RNA splicing branchpoints using a LSTM network. LaBranchoR uses only the sequence 1 to 70 base pairs upstream of a three prime splice site as a feature. In our paper, we show that LaBranchoR predicts a correct branchpoint for over 90% of 3' splice sites! See our website for precomputed predictions for all introns in gencode v19.
https://github.com/jpaggi/labranchor
Last synced: 4 months ago
JSON representation
LaBranchoR predicts RNA splicing branchpoints using a LSTM network. LaBranchoR uses only the sequence 1 to 70 base pairs upstream of a three prime splice site as a feature. In our paper, we show that LaBranchoR predicts a correct branchpoint for over 90% of 3' splice sites! See our website for precomputed predictions for all introns in gencode v19.
- Host: GitHub
- URL: https://github.com/jpaggi/labranchor
- Owner: jpaggi
- Created: 2017-08-23T22:34:33.000Z (over 8 years ago)
- Default Branch: master
- Last Pushed: 2019-02-20T01:03:32.000Z (about 7 years ago)
- Last Synced: 2024-05-08T00:39:42.611Z (almost 2 years ago)
- Language: Jupyter Notebook
- Homepage: http://bejerano.stanford.edu/labranchor/
- Size: 170 MB
- Stars: 5
- Watchers: 2
- Forks: 3
- Open Issues: 1
-
Metadata Files:
- Readme: readme.md
Awesome Lists containing this project
- awesome-bioinfo-tools - LaBrachoR