https://github.com/jtleek/data

Data resources created by the Leek group
https://github.com/jtleek/data

Last synced: about 1 month ago
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Data resources created by the Leek group

• Host: GitHub
• URL: https://github.com/jtleek/data
• Owner: jtleek
• Created: 2020-12-10T21:39:54.000Z (about 4 years ago)
• Default Branch: main
• Last Pushed: 2020-12-10T21:40:55.000Z (about 4 years ago)
• Last Synced: 2024-08-09T02:19:56.156Z (4 months ago)
• Size: 1.95 KB
• Stars: 12
• Watchers: 3
• Forks: 4
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

        
## Curated Data Sets

* [tidypvals](https://github.com/jtleek/tidypvals) - data from over 2.5 million published p-values compiled by Jeff Leek. 

* [recount2](https://jhubiostatistics.shinyapps.io/recount/) - large collection of RNA-seq data created by Leo Collado Torres, Ben Langmead, and Abhi Nellore.  

* [Recount](http://bowtie-bio.sourceforge.net/recount/) a database of free RNA-seq data sets at the gene count level created by Alyssa Frazee

* [Medical Journal P-value Data](https://github.com/jtleek/swfdr/blob/master/pvalueData.rda) - a set of p-values scraped from the abstracts of the New England Journal of Medicine, JAMA, BMJ, The Lancet, and the Amerian Journal of Epidemiology from 2000-2010 created by Jeff Leek. 

* [Processed GEUVADIS data](https://www.dropbox.com/s/kp5th9hgkq8ckom/geuvadisbg.rda) - processed data from 667 RNA-seq samples from the [GEUVADIS](http://www.geuvadis.org/) project created by Alyssa Frazee.

* [GEUVADIS BAM files](http://www.ebi.ac.uk/arrayexpress/experiments/E-GEUV-6/) - processed with Tophat2 and created by Alyssa Frazee

* [anitProfiles data](http://bioconductor.org/packages/release/bioc/html/antiProfiles.html) - gene expression data from cancer and normal samples used in our paper on [classifying with variance](http://www.biomedcentral.com/1471-2105/13/272) created by Hector Corrada Bravo.

* [Peer review data](http://www.biostat.jhsph.edu/~jleek/peerreview) - data from our laboratory experiment of peer review created by Jeff Leek and Margaret Taub.

* [Batch effect data](http://rafalab.jhsph.edu/batch/) - data on batch effects from a range of genomic technologies created by Jeff Leek, Rafa Irizarry,Hector Corrada Bravo, Ben Langmead, Keith Baggerly, Evan Johnson, Rob Scharpf, and David Simcha. 

* [Bladder batch data](http://www.bioconductor.org/packages/devel/data/experiment/html/bladderbatch.html) - data on batch effects from a study of bladder cancer in expression set format created by Jeff Leek

* [Braincloud](http://braincloud.jhmi.edu) - data from [our paper](http://www.nature.com/nature/journal/v478/n7370/full/nature10524.html) looking at patterns of variation in gene expression in the human brain created by Carlo Colantuoni.